Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04880 ATGAATTACCAACCTTCATCTGAGAGCATAAAGCTCACCTTCGTCATACTTGTAGCAGTTTCATTTTTTGCCTCTATGACCTTTCTGCTAGTAATCACCTTTGTCCCCTCTAATGTTAAGTTCCACATAACTCAGGCTTCTCTCACAAAGTTCAACCTCACAAGCAACAACAAATTAGATTACAAGTTAGAAGCTAACATCACATCAAGAAATCCAAACAAAAACGTTGAAATATACTACATGACGATCACCGCAATTGCGCGGTACAAAGATAATGAGTTTGCTAGGATGAATCTGTCATCTTTTGATCAAGGCCACAAGAATACCAGTTTTCTGCATGTAGTGTTTCAAGGGAAGGGTTTGATCAAACTCAAACCTAAACAACTTTTCGAGTATAATGAAGAGACGCGTGTAGGGATCTATAATGACTTGGCTGTTGATTTGGATCTTTTAATCAGGTATAAGTTTAGAACTCACACGACTTGGCCCTACAATCCGCCAATGGTGAAATGTCGTCGATTGAGTCTTTCTTTGATTTCTAATGATAACTCAACATCACCATCTTCTTTTCATGTTACTAGATGCAAAACTGGATGTTTCTTTGTTAATGGTTAA 615 0.3756 MNYQPSSESIKLTFVILVAVSFFASMTFLLVITFVPSNVKFHITQASLTKFNLTSNNKLDYKLEANITSRNPNKNVEIYYMTITAIARYKDNEFARMNLSSFDQGHKNTSFLHVVFQGKGLIKLKPKQLFEYNEETRVGIYNDLAVDLDLLIRYKFRTHTTWPYNPPMVKCRRLSLSLISNDNSTSPSSFHVTRCKTGCFFVNG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04880 204 PANTHER OS05G0367900 PROTEIN 14 177 IPR044839 GO:0098542
Vivi6g04880 204 Pfam Late embryogenesis abundant protein 66 129 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04880 Vivi-Chr6 152830125 152830739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04880 38 186 SNARE and Associated Proteins AT1G32270 32.895 3.80e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04880 - - vvo:131615030 325.479