Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04864 ATGAGTAAGCGTGAAATGTCGAAGGTGAAGCAGTCGCAGGTTCCTTTGGCTACGTTGATTGGCCGTGAGCTTCGAAATGAGAAAGTTGAAAATCCTTTTGTGAAGTATGGACAGGCTGGATTGGCTAAGAAAGGAGAAGATTACTTTCTGATCAAAACAGATTGCCATAGGGTTCCCGGGGATCCGTCGACCGCGTTTTCTGTTTTTGCGGTTTTTGATGGGCATAACGGTATATCAGCTGCTATTTATGCAAAAGAAAACTTGCTTAATAATGTTTTGAGTGCAATACCGCAAGATATCAGCAGGGATGCATGGCTACAGGCCCTGCCTCGCGCTCTAGTTGTTGGTTTTGTGAAGACTGACACAGAGTTTCAGAAGAAGGGGGAAACCTCTGGAACAACAGTTACATTTGTGCTGGTTGATGGATGGACTGTCACTGTTGCATCTGTTGGTGATTCCCGTTGCATATTGGATACTCAGGGAGGTGTAGTTTCTCTCCTGACAGTTGATCACAGACTTGAAGAGAATGTAGAAGAGAGGGAACGTGTTACTGCTAGTGGTGGTGAAGTAGGAAGACTCAATGTATTTGGGGGAAATGCGGTAGGACCTCTTCGCTGCTGGCCTGGTGGACTTTGCCTATCTAGATCAATAGGAGACACAGATGTGGGAGAGTATATTGTGCCAATACCACATGTTAAACAAGTGAAACTTTCAAATGCTGGTGGAAGGCTTATTATAGCCTCTGATGGTATTTGGGATACTATATCGAATGAGACAGCCGCCATGTCATGTCGGGGTCTACCTGCAGAACTTGCTGCCAAGCTAGTAGTTAAGGAAGCTCTAAGATCTAGAGGCTTGAAGGATGATACAACCTGCCTTGTAGTAGATATTATTCCTTCTGACCACCCTGTATTACCACCAACTCCAAGAAAGAAACATAATATGCTAACAGCGCTTCTCTTTAGAAAGAAATCTGAGAACTCTACAAACAAAGCTACGAGCAAGCTTTCTGCAGTTGGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTATAGAAAGGCTTGGTAAGGATTTTCCATTTGATAAGAATTCGGAGATTTTCCGTTGTGCGATTTGCCAAGTGGATCAACCCCCTGGGAATGGTCTATCAGTGAACTCTGGACCTTTCTTTTCTCCAGCATCTAAGCCATGGGAAGGGCCATTTCTCTGCACAAACTGTCGAAAGAAAAAAGATGCCATGGAAGGAAAGAGGCCCAGCTCACATACTGTTACAGCACAGTAA 1290 0.4442 MSKREMSKVKQSQVPLATLIGRELRNEKVENPFVKYGQAGLAKKGEDYFLIKTDCHRVPGDPSTAFSVFAVFDGHNGISAAIYAKENLLNNVLSAIPQDISRDAWLQALPRALVVGFVKTDTEFQKKGETSGTTVTFVLVDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVFGGNAVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTISNETAAMSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDHPVLPPTPRKKHNMLTALLFRKKSENSTNKATSKLSAVGVVEELFEEGSAMLIERLGKDFPFDKNSEIFRCAICQVDQPPGNGLSVNSGPFFSPASKPWEGPFLCTNCRKKKDAMEGKRPSSHTVTAQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04864 429 ProSiteProfiles PPM-type phosphatase domain profile. 32 297 IPR001932 -
Vivi6g04864 429 SMART PP2C_4 23 295 IPR001932 -
Vivi6g04864 429 SMART PP2C_SIG_2 50 297 IPR001932 -
Vivi6g04864 429 Pfam Protein phosphatase 2C 62 266 IPR001932 -
Vivi6g04864 429 Gene3D - 33 301 IPR036457 -
Vivi6g04864 429 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Vivi6g04864 429 PANTHER PROTEIN PHOSPHATASE 44 296 IPR015655 GO:0004722|GO:0006470
Vivi6g04864 429 FunFam probable protein phosphatase 2C 5 35 302 - -
Vivi6g04864 429 CDD PP2Cc 43 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04864 Vivi-Chr6 152524166 152527257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04864 1 427 PP2C-type Phosphatase Gene Family AT1G09160 76.112 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04864 - - gmx:100807886 748.429