Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi6g04859 | ATGGTAAAGGGAGGGAAGGTTAGTAGCAAAGGTGGTTTAAGGAAAAGGGTTAGGTCAAAGGGGGGTGGTTCGGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCGGGGAATGTGTCTGATTGTGCTGAGGATGATTGTTTTTCTTTAGATGGATGTGCGGCTGAGAGTTTTGATGGTTTTATAGAAGATGAGGATGTGGAGGAGGAGGGGTTTCGACGGGTGACGAAATTTAAGGGATCGAGGGGTAAAACGGGTGTGAGGCGTCAGGGGAAGAATGTGAGTAAAACCGCGCGGAAGAGACGGAGAATTGAATATGCAGAAGAACTAGATGAGGAGGAAGAAGAAGAAGAAGATGAAGAAGAAGAGGTAGAAGAAGAAGATGATGATGATTATGATGGAGAAGAAGAGGAGGATGAAGAAGAAGAAAAAGAAGTTGAAGAGGTAGAATACGAAGAAGAGGAAGAAGAAGAAAAAGAAGTGGAAGAGGTAGAATATGAAGAAGAAGAAGAAGAAAAAGAAGTGGAAGAGGTAGAATACGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAGAGGTAGATGGAAATGATGAGGATGAGGATTTCAATTATGATGATGACGAATTTATACCGGAGGAAGAAGATTACACGGATGAGGAGGAAGAAGAAAGAAGGGGCGGGAAGAAGAAAAAAAAGGATTTTAGTTATGAAGATGAAGAATTTATACCGACAGAAGAAGAAAGAAGCGGCAGGAAGAAGAAAAAGGAGGATTTCAATGATGAAGATGAGGAACTTATACCGTTGGAAGAAGAAAGAAGGGGAAGGAAGAAGCAAAAGGAGGATTTAAATTATGAAGATGAGGAATTTATCCCGACGGAAGAAGATTACACCGATGAGGAGGAAGAAGAAACGAGGGGTATAACGAAGAAAAACAATGGTATTAAAATGGGCAAGAAGAGGACTTTGAAGAAAAGGGTATCTGCAACTTCTAGCAGAGGTCGAAAAAGGAGTGGCTCTAGAGTTTCCAAGAAGCCCAAAAGAAAGAGAAGAGGAAAGAGTGGAGGATCGAGGAGGAAAGTAAAGTGTGATGATGATGCAGACGATTTTTTTGATAATGGCCCCGCCATCAGAACAAATAGCAGAAAGAAATCAGGCCAGAAAAGGAGAAGGGTTCTCGTTGAAGACGCCAATTCTGGTTCAGATTGTGAGACTAGACTATCTGATTATGAGTTTACTATCTCCGAAGAAGAAAAAGAACAGGTGAGAGAAGCCATGGAGTTGTGCGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGAAAAATGAAGAGGTTGAAATACATGAAGATCTGCATCAGCAACGGAAGCCTCCAGCACAGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTTGAGGAGTTAAAAATTGAGGTGACAAAGCAGGTCTGTGGAATTTGTCTGTCCGAGGAAAATAAAAGAAGAGTAAGGGGAATACTAAACAGCTGCACTCACTACTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGCTGCCCTCTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCCACACGATCAACAACAGCTCAAGAAGCAGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGTTACATTGATCCATACGAGTCCGTTATTTGTTCAGAGTGCAATCTCGGTGGAGATGACGGCCTCATGCTACTCTGTGATATATGTGATTCTCCCGCACACACTTATTGTGTTGGTTTGGGGCGAGAAGTACCGGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAACGCAGTGCTGATATAAGAGTTACTACCCAAAGCCAGCCTTCTAGACCATCGCCTGTCCATATACGAGAAACTATAGACCTGAACCTGATGTCATCACCCTATACATCTTTTGGTCAAGGGTTTGGGCATCTTTCATCCTCTAGATTTTCGGGCAGAAGTGCCGAAGGCGCTTCTCCGATGTCTGGTGGCGGGGCGCCAACTGTATCAGAGAGACGACGGATACACCGTCAAATTCAGCAGCTACGATCAATGGATAGAATGACTTATACAACCGGCAGAGTTAACGGTGTTTCAGCTACCAGTACAATAAGTAACTTGCATAGCTCTGAAATTGATCAAAATAGGGAACCTACTTCTCCATATACAAGGACACAGGATGTAGGAACATCCTATCACACATTTTTTGAGGAGAGATTAGGCAACAACATCTCTCCATTAATGCAGAATGGAGATCACTTCTCCACAACAATAAGCAATTCAATAAGGTCAGTGGTTCAGGATTCAACCATGTTTTCCAACGTGGCTATGAATGCGGTTATATGGCCTGGATTTTCAGGGACACGCACCTTATCAGATATTGAACCAATCCACCCGTTCAGCAGCAGATCAAACATTGTCACCGAGTGTAGTATTCCTCCGACTATCATAGAAGAAGATAACTTGCACATTGTAAAGGAGCAGGTGCAGTCAATGGTTAAAAGCCAACTCAAGAGATTGTCTGAAGATGCCGATTTGGATTATAGTACATTCAAAGACATTGCAAAGAGTTCTACACATACGATACTCGCTGCTTGTGGACTCGAGCACAAGACGAGCGAGGTTTGTATGGCGCCTCCACCATCGGTCTGTCCCCACATTGAATTAATTGCTGGCGGACAAACGAGTATGATGAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGGATTTTGGACACTAGAATGTCTTCACAGTGGTTAAGATTAGGAATTTAG | 2910 | 0.4265 | MVKGGKVSSKGGLRKRVRSKGGGSDDSDEDYVVSDDAGNVSDCAEDDCFSLDGCAAESFDGFIEDEDVEEEGFRRVTKFKGSRGKTGVRRQGKNVSKTARKRRRIEYAEELDEEEEEEEDEEEEVEEEDDDDYDGEEEEDEEEEKEVEEVEYEEEEEEEKEVEEVEYEEEEEEKEVEEVEYEEEEEEKEVEEVDGNDEDEDFNYDDDEFIPEEEDYTDEEEEERRGGKKKKKDFSYEDEEFIPTEEERSGRKKKKEDFNDEDEELIPLEEERRGRKKQKEDLNYEDEEFIPTEEDYTDEEEEETRGITKKNNGIKMGKKRTLKKRVSATSSRGRKRSGSRVSKKPKRKRRGKSGGSRRKVKCDDDADDFFDNGPAIRTNSRKKSGQKRRRVLVEDANSGSDCETRLSDYEFTISEEEKEQVREAMELCGNIRRNLRRASLRMKNEEVEIHEDLHQQRKPPAQKGKEKIEESQGRKGKEKVEELKIEVTKQVCGICLSEENKRRVRGILNSCTHYFCFACIMEWSKVESRCPLCKQRFKTISKPTRSTTAQEAVIQVPERDQVYQPTEEELRSYIDPYESVICSECNLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQERSADIRVTTQSQPSRPSPVHIRETIDLNLMSSPYTSFGQGFGHLSSSRFSGRSAEGASPMSGGGAPTVSERRRIHRQIQQLRSMDRMTYTTGRVNGVSATSTISNLHSSEIDQNREPTSPYTRTQDVGTSYHTFFEERLGNNISPLMQNGDHFSTTISNSIRSVVQDSTMFSNVAMNAVIWPGFSGTRTLSDIEPIHPFSSRSNIVTECSIPPTIIEEDNLHIVKEQVQSMVKSQLKRLSEDADLDYSTFKDIAKSSTHTILAACGLEHKTSEVCMAPPPSVCPHIELIAGGQTSMMKGCCSSCFDSFVGDVVKRILDTRMSSQWLRLGI | 969 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi6g04859 | 969 | SMART | PHD_3 | 581 | 626 | IPR001965 | - | |
Vivi6g04859 | 969 | MobiDBLite | consensus disorder prediction | 312 | 356 | - | - | |
Vivi6g04859 | 969 | MobiDBLite | consensus disorder prediction | 221 | 261 | - | - | |
Vivi6g04859 | 969 | SUPERFAMILY | FYVE/PHD zinc finger | 553 | 627 | IPR011011 | - | |
Vivi6g04859 | 969 | ProSiteProfiles | Zinc finger PHD-type profile. | 579 | 628 | IPR019787 | - | |
Vivi6g04859 | 969 | SUPERFAMILY | RING/U-box | 491 | 540 | - | - | |
Vivi6g04859 | 969 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Vivi6g04859 | 969 | ProSiteProfiles | Zinc finger RING-type profile. | 492 | 534 | IPR001841 | - | |
Vivi6g04859 | 969 | Pfam | PHD-finger | 581 | 627 | IPR019787 | - | |
Vivi6g04859 | 969 | Coils | Coil | 133 | 196 | - | - | |
Vivi6g04859 | 969 | MobiDBLite | consensus disorder prediction | 451 | 475 | - | - | |
Vivi6g04859 | 969 | MobiDBLite | consensus disorder prediction | 268 | 285 | - | - | |
Vivi6g04859 | 969 | PANTHER | F18C1.6 PROTEIN | 227 | 959 | - | - | |
Vivi6g04859 | 969 | MobiDBLite | consensus disorder prediction | 61 | 395 | - | - | |
Vivi6g04859 | 969 | MobiDBLite | consensus disorder prediction | 687 | 709 | - | - | |
Vivi6g04859 | 969 | ProSitePatterns | Zinc finger RING-type signature. | 511 | 520 | IPR017907 | - | |
Vivi6g04859 | 969 | MobiDBLite | consensus disorder prediction | 110 | 220 | - | - | |
Vivi6g04859 | 969 | Pfam | Ring finger domain | 491 | 534 | IPR001841 | - | |
Vivi6g04859 | 969 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 486 | 554 | IPR013083 | - | |
Vivi6g04859 | 969 | MobiDBLite | consensus disorder prediction | 357 | 371 | - | - | |
Vivi6g04859 | 969 | MobiDBLite | consensus disorder prediction | 286 | 301 | - | - | |
Vivi6g04859 | 969 | CDD | RING-HC_Topors | 490 | 537 | - | - | |
Vivi6g04859 | 969 | Coils | Coil | 97 | 131 | - | - | |
Vivi6g04859 | 969 | SMART | ring_2 | 492 | 533 | IPR001841 | - | |
Vivi6g04859 | 969 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 569 | 652 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi6g04859 | Vivi-Chr6 | 152470699 | 152474477 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi6g04859 | 576 | 625 | C2H2 Transcription Factor Family | AT3G01460 | 46.154 | 5.61e-09 | 58.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Vivi6g04859 | PHD | 7.3e-09 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi6g04859 | - | - | vvo:131610541 | 1403.27 |