Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04859 ATGGTAAAGGGAGGGAAGGTTAGTAGCAAAGGTGGTTTAAGGAAAAGGGTTAGGTCAAAGGGGGGTGGTTCGGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCGGGGAATGTGTCTGATTGTGCTGAGGATGATTGTTTTTCTTTAGATGGATGTGCGGCTGAGAGTTTTGATGGTTTTATAGAAGATGAGGATGTGGAGGAGGAGGGGTTTCGACGGGTGACGAAATTTAAGGGATCGAGGGGTAAAACGGGTGTGAGGCGTCAGGGGAAGAATGTGAGTAAAACCGCGCGGAAGAGACGGAGAATTGAATATGCAGAAGAACTAGATGAGGAGGAAGAAGAAGAAGAAGATGAAGAAGAAGAGGTAGAAGAAGAAGATGATGATGATTATGATGGAGAAGAAGAGGAGGATGAAGAAGAAGAAAAAGAAGTTGAAGAGGTAGAATACGAAGAAGAGGAAGAAGAAGAAAAAGAAGTGGAAGAGGTAGAATATGAAGAAGAAGAAGAAGAAAAAGAAGTGGAAGAGGTAGAATACGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAGAGGTAGATGGAAATGATGAGGATGAGGATTTCAATTATGATGATGACGAATTTATACCGGAGGAAGAAGATTACACGGATGAGGAGGAAGAAGAAAGAAGGGGCGGGAAGAAGAAAAAAAAGGATTTTAGTTATGAAGATGAAGAATTTATACCGACAGAAGAAGAAAGAAGCGGCAGGAAGAAGAAAAAGGAGGATTTCAATGATGAAGATGAGGAACTTATACCGTTGGAAGAAGAAAGAAGGGGAAGGAAGAAGCAAAAGGAGGATTTAAATTATGAAGATGAGGAATTTATCCCGACGGAAGAAGATTACACCGATGAGGAGGAAGAAGAAACGAGGGGTATAACGAAGAAAAACAATGGTATTAAAATGGGCAAGAAGAGGACTTTGAAGAAAAGGGTATCTGCAACTTCTAGCAGAGGTCGAAAAAGGAGTGGCTCTAGAGTTTCCAAGAAGCCCAAAAGAAAGAGAAGAGGAAAGAGTGGAGGATCGAGGAGGAAAGTAAAGTGTGATGATGATGCAGACGATTTTTTTGATAATGGCCCCGCCATCAGAACAAATAGCAGAAAGAAATCAGGCCAGAAAAGGAGAAGGGTTCTCGTTGAAGACGCCAATTCTGGTTCAGATTGTGAGACTAGACTATCTGATTATGAGTTTACTATCTCCGAAGAAGAAAAAGAACAGGTGAGAGAAGCCATGGAGTTGTGCGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGAAAAATGAAGAGGTTGAAATACATGAAGATCTGCATCAGCAACGGAAGCCTCCAGCACAGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTTGAGGAGTTAAAAATTGAGGTGACAAAGCAGGTCTGTGGAATTTGTCTGTCCGAGGAAAATAAAAGAAGAGTAAGGGGAATACTAAACAGCTGCACTCACTACTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGCTGCCCTCTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCCACACGATCAACAACAGCTCAAGAAGCAGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGTTACATTGATCCATACGAGTCCGTTATTTGTTCAGAGTGCAATCTCGGTGGAGATGACGGCCTCATGCTACTCTGTGATATATGTGATTCTCCCGCACACACTTATTGTGTTGGTTTGGGGCGAGAAGTACCGGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAACGCAGTGCTGATATAAGAGTTACTACCCAAAGCCAGCCTTCTAGACCATCGCCTGTCCATATACGAGAAACTATAGACCTGAACCTGATGTCATCACCCTATACATCTTTTGGTCAAGGGTTTGGGCATCTTTCATCCTCTAGATTTTCGGGCAGAAGTGCCGAAGGCGCTTCTCCGATGTCTGGTGGCGGGGCGCCAACTGTATCAGAGAGACGACGGATACACCGTCAAATTCAGCAGCTACGATCAATGGATAGAATGACTTATACAACCGGCAGAGTTAACGGTGTTTCAGCTACCAGTACAATAAGTAACTTGCATAGCTCTGAAATTGATCAAAATAGGGAACCTACTTCTCCATATACAAGGACACAGGATGTAGGAACATCCTATCACACATTTTTTGAGGAGAGATTAGGCAACAACATCTCTCCATTAATGCAGAATGGAGATCACTTCTCCACAACAATAAGCAATTCAATAAGGTCAGTGGTTCAGGATTCAACCATGTTTTCCAACGTGGCTATGAATGCGGTTATATGGCCTGGATTTTCAGGGACACGCACCTTATCAGATATTGAACCAATCCACCCGTTCAGCAGCAGATCAAACATTGTCACCGAGTGTAGTATTCCTCCGACTATCATAGAAGAAGATAACTTGCACATTGTAAAGGAGCAGGTGCAGTCAATGGTTAAAAGCCAACTCAAGAGATTGTCTGAAGATGCCGATTTGGATTATAGTACATTCAAAGACATTGCAAAGAGTTCTACACATACGATACTCGCTGCTTGTGGACTCGAGCACAAGACGAGCGAGGTTTGTATGGCGCCTCCACCATCGGTCTGTCCCCACATTGAATTAATTGCTGGCGGACAAACGAGTATGATGAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGGATTTTGGACACTAGAATGTCTTCACAGTGGTTAAGATTAGGAATTTAG 2910 0.4265 MVKGGKVSSKGGLRKRVRSKGGGSDDSDEDYVVSDDAGNVSDCAEDDCFSLDGCAAESFDGFIEDEDVEEEGFRRVTKFKGSRGKTGVRRQGKNVSKTARKRRRIEYAEELDEEEEEEEDEEEEVEEEDDDDYDGEEEEDEEEEKEVEEVEYEEEEEEEKEVEEVEYEEEEEEKEVEEVEYEEEEEEKEVEEVDGNDEDEDFNYDDDEFIPEEEDYTDEEEEERRGGKKKKKDFSYEDEEFIPTEEERSGRKKKKEDFNDEDEELIPLEEERRGRKKQKEDLNYEDEEFIPTEEDYTDEEEEETRGITKKNNGIKMGKKRTLKKRVSATSSRGRKRSGSRVSKKPKRKRRGKSGGSRRKVKCDDDADDFFDNGPAIRTNSRKKSGQKRRRVLVEDANSGSDCETRLSDYEFTISEEEKEQVREAMELCGNIRRNLRRASLRMKNEEVEIHEDLHQQRKPPAQKGKEKIEESQGRKGKEKVEELKIEVTKQVCGICLSEENKRRVRGILNSCTHYFCFACIMEWSKVESRCPLCKQRFKTISKPTRSTTAQEAVIQVPERDQVYQPTEEELRSYIDPYESVICSECNLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQERSADIRVTTQSQPSRPSPVHIRETIDLNLMSSPYTSFGQGFGHLSSSRFSGRSAEGASPMSGGGAPTVSERRRIHRQIQQLRSMDRMTYTTGRVNGVSATSTISNLHSSEIDQNREPTSPYTRTQDVGTSYHTFFEERLGNNISPLMQNGDHFSTTISNSIRSVVQDSTMFSNVAMNAVIWPGFSGTRTLSDIEPIHPFSSRSNIVTECSIPPTIIEEDNLHIVKEQVQSMVKSQLKRLSEDADLDYSTFKDIAKSSTHTILAACGLEHKTSEVCMAPPPSVCPHIELIAGGQTSMMKGCCSSCFDSFVGDVVKRILDTRMSSQWLRLGI 969
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04859 969 SMART PHD_3 581 626 IPR001965 -
Vivi6g04859 969 MobiDBLite consensus disorder prediction 312 356 - -
Vivi6g04859 969 MobiDBLite consensus disorder prediction 221 261 - -
Vivi6g04859 969 SUPERFAMILY FYVE/PHD zinc finger 553 627 IPR011011 -
Vivi6g04859 969 ProSiteProfiles Zinc finger PHD-type profile. 579 628 IPR019787 -
Vivi6g04859 969 SUPERFAMILY RING/U-box 491 540 - -
Vivi6g04859 969 MobiDBLite consensus disorder prediction 1 39 - -
Vivi6g04859 969 ProSiteProfiles Zinc finger RING-type profile. 492 534 IPR001841 -
Vivi6g04859 969 Pfam PHD-finger 581 627 IPR019787 -
Vivi6g04859 969 Coils Coil 133 196 - -
Vivi6g04859 969 MobiDBLite consensus disorder prediction 451 475 - -
Vivi6g04859 969 MobiDBLite consensus disorder prediction 268 285 - -
Vivi6g04859 969 PANTHER F18C1.6 PROTEIN 227 959 - -
Vivi6g04859 969 MobiDBLite consensus disorder prediction 61 395 - -
Vivi6g04859 969 MobiDBLite consensus disorder prediction 687 709 - -
Vivi6g04859 969 ProSitePatterns Zinc finger RING-type signature. 511 520 IPR017907 -
Vivi6g04859 969 MobiDBLite consensus disorder prediction 110 220 - -
Vivi6g04859 969 Pfam Ring finger domain 491 534 IPR001841 -
Vivi6g04859 969 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 554 IPR013083 -
Vivi6g04859 969 MobiDBLite consensus disorder prediction 357 371 - -
Vivi6g04859 969 MobiDBLite consensus disorder prediction 286 301 - -
Vivi6g04859 969 CDD RING-HC_Topors 490 537 - -
Vivi6g04859 969 Coils Coil 97 131 - -
Vivi6g04859 969 SMART ring_2 492 533 IPR001841 -
Vivi6g04859 969 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 652 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi6g04859 Vivi-Chr6 152470699 152474477 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04859 576 625 C2H2 Transcription Factor Family AT3G01460 46.154 5.61e-09 58.5
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi6g04859 PHD 7.3e-09 CL0390
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04859 - - vvo:131610541 1403.27