Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04858 ATGGTAAAGGGAGGGAAGGTTAGTAGCAAAGGTGGTTTAAGGAAAAGGGTTAGGTCAAAGGGGGGTGGTTCGGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCGGGGAATGTGTCTGATTGTGCTGAGGATGATTGTTTTTCTTTAGATGGATGTGCGGCTGAGAGTTTTGATGGTTTTATAGAAGATGAGGATGTGGAGGAGGAGGGGTTTCGACGGGTGACGAAATTTAAGGGATCGAGGGGTAAAACGGGTGTGAGGCGTCAGGGGAAGAATGTGAGTAAAACCGCGCGGAAGAGACGGAGAATTGAATATGCAGAAGAACTAGATGAGGAGGAAGAAGAAGAAGAAGATGAAGAAGAAGAGGTAGAAGAAGAAGATGATGATGATTATGATGGAGAAGAAGAGGAGGATGAAGAAGAAGAAAAAGAAGTTGAAGAGGTAGAATACGAAGAAGAGGAAGAAGAAGAAAAAGAAGTGGAAGAGGTAGAATATGAAGAAGAAGAAGAAGAAAAAGAAGTGGAAGAGGTAGATGGAAATGATGAGGATGAGGATTTCAATTATGATGATGACGAATTTATACCGGAGGAAGAAGATTACACGGATGAGGAGGAAGAAGAAAGAAGGGGCGGGAAGAAGAAAAAAAAGGATTTTAGTTATGAAGATGAAGAATTTATACCGACAGAAGAAGAAAGAAGCGGCAGGAAGAAGAAAAAGGAGGATTTCAATGATGAAGATGAGGAACTTATACCGTTGGAAGAAGAAAGAAGGGGAAGGAAGAAGCAAAAGGAGGATTTAAATTATGAAGATGAGGAATTTATCCCGACGGAAGAAGATTACACCGATGAGGAGGAAGAAGAAACGAGGGGTATAACGAAGAAAAACAATGGTATTAAAATGGGCAAGAAGAGGACTTTGAAGAAAAGGGTATCTGCAACTTCTAGCAGAGGTCGAAAAAGGAGTGGCTCTAGAGTTTCCAAGAAGCCCAAAAGAAAGAGAAGAGGAAAGAGTGGAGGATCGAGGAGGAAAGTAAAGTGTGATGATGATGCAGACGATTTTTTTGATAATGGCCCCGCCATCAGAACAAATAGCAGAAAGAAATCAGGCCAGAAAAGGAGAAGGGTTCTCGTTGAAGACGCCAATTCTGGTTCAGATTGTGAGACTAGACTATCTGATTATGAGTTTACTATCTCCGAAGAAGAAAAAGAACAGGTGAGAGAAGCCATGGAGTTGTGCGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGAAAAATGAAGAGGTTGAAATACATGAAGATCTGCATCAGCAACGGAAGCCTCCAGCACAGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTTGAGGAGTTAAAAATTGAGGTGACAAAGCAGGTCTGTGGAATTTGTCTGTCCGAGGAAAATAAAAGAAGAGTAAGGGGAATACTAAACAGCTGCACTCACTACTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGCTGCCCTCTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCCACACGATCAACAACAGCTCAAGAAGCAGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGTTACATTGATCCATACGAGTCCGTTATTTGTTCAGAGTGCAATCTCGGTGGAGATGACGGCCTCATGCTACTCTGTGATATATGTGATTCTCCCGCACACACTTATTGTGTTGGTTTGGGGCGAGAAGTACCGGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAACGCAGTGCTGATATAAGAGTTACTACCCAAAGCCAGCCTTCTAGACCATCGCCTGTCCATATACGAGAAACTATAGACCTGAACCTGATGTCATCACCCTATACATCTTTTGGTCAAGGGTTTGGGCATCTTTCATCCTCTAGATTTTCGGGCAGAAGTGCCGAAGGCGCTTCTCCGATGTCTGGTGGCGGGGCGCCAACTGTATCAGAGAGACGACGGATACACCGTCAAATTCAGCAGCTACGATCAATGGATAGAATGACTTATACAACCGGCAGAGTTAACGGTGTTTCAGCTACCAGTACAATAAGTAACTTGCATAGCTCTGAAATTGATCAAAATAGGGAACCTACTTCTCCATATACAAGGACACAGGATGTAGGAACATCCTATCACACATTTTTTGAGGAGAGATTAGGCAACAACATCTCTCCATTAATGCAGAATGGAGATCACTTCTCCACAACAATAAGCAATTCAATAAGGTCAGTGGTTCAGGATTCAACCATGTTTTCCAACGTGGCTATGAATGCGGTTATATGGCCTGGATTTTCAGGGACACGCACCTTATCAGATATTGAACCAATCCACCCGTTCAGCAGCAGATCAAACATTGTCACCGAGTGTAGTATTCCTCCGACTATCATAGAAGAAGATAACTTGCACATTGTAAAGGAGCAGGTGCAGTCAATGGTTAAAAGCCAACTCAAGAGATTGTCTGAAGATGCCGATTTGGATTATAGTACATTCAAAGACATTGCAAAGAGTTCTACACATACGATACTCGCTGCTTGTGGACTCGAGCACAAGACGAGCGAGGTTTGTATGGCGCCTCCACCATCGGTCTGTCCCCACATTGAATTAATTGCTGGCGGACAAACGAGTATGATGAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGGATTTTGGACACTAGAATGTCTTCACAGTGGTTAAGATTAGGAATTTAG 2868 0.4278 MVKGGKVSSKGGLRKRVRSKGGGSDDSDEDYVVSDDAGNVSDCAEDDCFSLDGCAAESFDGFIEDEDVEEEGFRRVTKFKGSRGKTGVRRQGKNVSKTARKRRRIEYAEELDEEEEEEEDEEEEVEEEDDDDYDGEEEEDEEEEKEVEEVEYEEEEEEEKEVEEVEYEEEEEEKEVEEVDGNDEDEDFNYDDDEFIPEEEDYTDEEEEERRGGKKKKKDFSYEDEEFIPTEEERSGRKKKKEDFNDEDEELIPLEEERRGRKKQKEDLNYEDEEFIPTEEDYTDEEEEETRGITKKNNGIKMGKKRTLKKRVSATSSRGRKRSGSRVSKKPKRKRRGKSGGSRRKVKCDDDADDFFDNGPAIRTNSRKKSGQKRRRVLVEDANSGSDCETRLSDYEFTISEEEKEQVREAMELCGNIRRNLRRASLRMKNEEVEIHEDLHQQRKPPAQKGKEKIEESQGRKGKEKVEELKIEVTKQVCGICLSEENKRRVRGILNSCTHYFCFACIMEWSKVESRCPLCKQRFKTISKPTRSTTAQEAVIQVPERDQVYQPTEEELRSYIDPYESVICSECNLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQERSADIRVTTQSQPSRPSPVHIRETIDLNLMSSPYTSFGQGFGHLSSSRFSGRSAEGASPMSGGGAPTVSERRRIHRQIQQLRSMDRMTYTTGRVNGVSATSTISNLHSSEIDQNREPTSPYTRTQDVGTSYHTFFEERLGNNISPLMQNGDHFSTTISNSIRSVVQDSTMFSNVAMNAVIWPGFSGTRTLSDIEPIHPFSSRSNIVTECSIPPTIIEEDNLHIVKEQVQSMVKSQLKRLSEDADLDYSTFKDIAKSSTHTILAACGLEHKTSEVCMAPPPSVCPHIELIAGGQTSMMKGCCSSCFDSFVGDVVKRILDTRMSSQWLRLGI 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04858 955 MobiDBLite consensus disorder prediction 272 287 - -
Vivi6g04858 955 CDD RING-HC_Topors 476 523 - -
Vivi6g04858 955 MobiDBLite consensus disorder prediction 437 461 - -
Vivi6g04858 955 MobiDBLite consensus disorder prediction 1 39 - -
Vivi6g04858 955 ProSitePatterns Zinc finger RING-type signature. 497 506 IPR017907 -
Vivi6g04858 955 ProSiteProfiles Zinc finger PHD-type profile. 565 614 IPR019787 -
Vivi6g04858 955 MobiDBLite consensus disorder prediction 61 381 - -
Vivi6g04858 955 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 555 638 IPR013083 -
Vivi6g04858 955 MobiDBLite consensus disorder prediction 207 247 - -
Vivi6g04858 955 SUPERFAMILY RING/U-box 477 526 - -
Vivi6g04858 955 MobiDBLite consensus disorder prediction 110 206 - -
Vivi6g04858 955 Coils Coil 133 182 - -
Vivi6g04858 955 PANTHER F18C1.6 PROTEIN 213 945 - -
Vivi6g04858 955 SMART PHD_3 567 612 IPR001965 -
Vivi6g04858 955 MobiDBLite consensus disorder prediction 343 357 - -
Vivi6g04858 955 Pfam PHD-finger 567 613 IPR019787 -
Vivi6g04858 955 SUPERFAMILY FYVE/PHD zinc finger 539 613 IPR011011 -
Vivi6g04858 955 MobiDBLite consensus disorder prediction 254 271 - -
Vivi6g04858 955 SMART ring_2 478 519 IPR001841 -
Vivi6g04858 955 Pfam Ring finger domain 477 520 IPR001841 -
Vivi6g04858 955 MobiDBLite consensus disorder prediction 298 342 - -
Vivi6g04858 955 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 540 IPR013083 -
Vivi6g04858 955 MobiDBLite consensus disorder prediction 673 695 - -
Vivi6g04858 955 Coils Coil 97 131 - -
Vivi6g04858 955 ProSiteProfiles Zinc finger RING-type profile. 478 520 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04858 Vivi-Chr6 152470699 152474477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04858 562 611 C2H2 Transcription Factor Family AT3G01460 46.154 5.78e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi6g04858 PHD 7.2e-09 CL0390