Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04855 ATGGGAATCATGGATCAAATGAACAAGGAATGTTGTTCCTATGATGAAATGGGTGTGATCAAGAAATGTTGTGCTGATTGCAAAACCACCAAGACCCCACTTTGGAGAGGAGGACCAAATGGACCCAAAACGTTGTGCAACGCTTGTGGAATTAGGTACAGAAAGAGAAGAGGTTGTTGTAAGAAAGGACAAGAAAAGGAAAGGAAGAGAGAGAAATCAGAAAGTGAGAGTGAGGGTGATGGTGATGATGATGATGATTGGAGTGAGTCTTTGAAAATGAAGTTAGTGGCGTTAGGTGAAGAGGTTTTTTTGCATTCGGTTTTGAAGAAAGAAAAGAGGATTAAGTTGGGTGAAGAGGAAGAAGCTGCTGTGTGTTTAATGGCACTCTCTTGTGGCTTTGTTTTTGCTTGA 411 0.4112 MGIMDQMNKECCSYDEMGVIKKCCADCKTTKTPLWRGGPNGPKTLCNACGIRYRKRRGCCKKGQEKERKREKSESESEGDGDDDDDWSESLKMKLVALGEEVFLHSVLKKEKRIKLGEEEEAAVCLMALSCGFVFA 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04855 136 ProSitePatterns GATA-type zinc finger domain. 24 49 IPR000679 GO:0006355|GO:0043565
Vivi6g04855 136 PANTHER OS01G0976800 PROTEIN 20 135 - -
Vivi6g04855 136 ProSiteProfiles GATA-type zinc finger domain profile. 24 54 IPR000679 GO:0006355|GO:0043565
Vivi6g04855 136 Pfam GATA zinc finger 24 57 IPR000679 GO:0006355|GO:0043565
Vivi6g04855 136 MobiDBLite consensus disorder prediction 60 87 - -
Vivi6g04855 136 Gene3D - 20 79 IPR013088 GO:0006355|GO:0008270
Vivi6g04855 136 SMART GATA_3 18 69 IPR000679 GO:0006355|GO:0043565
Vivi6g04855 136 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 60 - -
Vivi6g04855 136 CDD ZnF_GATA 24 72 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04855 Vivi-Chr6 152442315 152443496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04855 21 136 C2C2-Gata Transcription Factor Family AT5G49300 55.172 1.54e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi6g04855 GATA 8.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04855 - - cam:101512290 191.045