Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04853 ATGGATCGAGATGGAGCAGGATCCAACGGTGGATCTTGCTACTACTCTGTTCTTGGCATTCGTAGTGACGCATCCTCCTCTGATATTCGCACCGCTTACCGGAAACTTGCTATGAGATGGCACCCTGATAAATGGACCCGGAACCCTGCAACTGCTGGAGAAGCAAAATTACGGTTTCAGCAAATTCAAGAAGCATACTCAGTTCTCTCGGATGAGTCTAAAAGATCAATGTACGATGCTGGACTCTATGATCCTTTAGAAGAAGAAGATGAAGAATTTTGTGATTTTATGAGCGAAATGATTTCAATGATGAACAATGTTAAAGATGAGGGGGATAGTTTTGAGGATTTACAGAGGATGTTCGTGGAGATGGTGGGTGGTGGAGATGGAATGGGGTGTGATATGAAGCAGGATCAGACGGCTGGGAAGAGAGGGCGATCAAGTGGATCAAAAGGCAACGCAGCCAAGCGCAGCAATCATCACCGATAG 489 0.4581 MDRDGAGSNGGSCYYSVLGIRSDASSSDIRTAYRKLAMRWHPDKWTRNPATAGEAKLRFQQIQEAYSVLSDESKRSMYDAGLYDPLEEEDEEFCDFMSEMISMMNNVKDEGDSFEDLQRMFVEMVGGGDGMGCDMKQDQTAGKRGRSSGSKGNAAKRSNHHR 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04853 162 SMART dnaj_3 12 74 IPR001623 -
Vivi6g04853 162 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Vivi6g04853 162 ProSiteProfiles dnaJ domain profile. 13 82 IPR001623 -
Vivi6g04853 162 CDD DnaJ 13 71 IPR001623 -
Vivi6g04853 162 Gene3D DnaJ domain 12 138 IPR036869 -
Vivi6g04853 162 SUPERFAMILY Chaperone J-domain 13 85 IPR036869 -
Vivi6g04853 162 MobiDBLite consensus disorder prediction 131 162 - -
Vivi6g04853 162 PRINTS DnaJ domain signature 54 74 IPR001623 -
Vivi6g04853 162 PRINTS DnaJ domain signature 156 162 IPR001623 -
Vivi6g04853 162 PRINTS DnaJ domain signature 15 33 IPR001623 -
Vivi6g04853 162 PRINTS DnaJ domain signature 33 48 IPR001623 -
Vivi6g04853 162 Pfam DnaJ domain 14 79 IPR001623 -
Vivi6g04853 162 PANTHER PUTATIVE, EXPRESSED-RELATED 8 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04853 Vivi-Chr6 152428191 152429535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04853 13 80 C2H2 Transcription Factor Family AT1G74250 43.478 5.28e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04853 - - mtr:11423150 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04853 6 152428191 152429535 Vivi6g04853 6 152428191 152429535 ECH