Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04818 ATGTCTAACACCAGCAACAATGTCGCTGGGGTTGACAATACATTCAGAAGAAAATTCGATCGTGAAGAGTATCTCGAACGAGCTCGGGAGCGTGAGAGACAGGAGGAAGAGGGTAGAGCAAAACCTAAAGGTAAAGGACCTCCGGTGCAGAGGAAGCCCTTGAAACATAGGGATTTTGAAGTAAACCTTGAATCCCGCTTGGGAAAGACTCAGGTGGTAACGCCGGTTGCACCACTAAGCCAACAGGCTGGATATTTCTGCTCAGTTTGTGAGTGTGTGGTGAAGGACTCTGCAAACTACTTGGATCATATCAATGGAAAGAAACATCAAAGAGCGTTGGGCATGTCTATGCGAGCTGAACGTTCTTCTCTCAAACAGGTTCAGGAACGGTTTGAATCTCTTAAGAAACGTAAAGACATCGGAAGCTTTACAGAGCAAGATTTTGATGAAAGGATTTTAAAACAGCAACAAGAAGAGGAAGAAAGAAAGCGACTGCGTCGGGAAAAGAAAAAAGAAAAGAAGATGGAGGCAGTTGAAGAACCAGAAATCGATCCTGACGTTGCTGCCTTGATGGGGTTTGGAGGTTTCCGGTCATCCAACAAAAAGTGA 609 0.4499 MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKGKGPPVQRKPLKHRDFEVNLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRAERSSLKQVQERFESLKKRKDIGSFTEQDFDERILKQQQEEEERKRLRREKKKEKKMEAVEEPEIDPDVAALMGFGGFRSSNKK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04818 202 SUPERFAMILY beta-beta-alpha zinc fingers 81 124 IPR036236 -
Vivi6g04818 202 Coils Coil 117 137 - -
Vivi6g04818 202 MobiDBLite consensus disorder prediction 20 44 - -
Vivi6g04818 202 MobiDBLite consensus disorder prediction 20 54 - -
Vivi6g04818 202 Pfam Zinc-finger of C2H2 type 85 109 - -
Vivi6g04818 202 MobiDBLite consensus disorder prediction 151 180 - -
Vivi6g04818 202 Gene3D Classic Zinc Finger 79 118 - -
Vivi6g04818 202 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Vivi6g04818 202 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Vivi6g04818 202 Coils Coil 153 175 - -
Vivi6g04818 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 4 202 IPR040107 GO:0000398|GO:0005681
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04818 Vivi-Chr6 151948098 151951436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04818 4 147 C2H2 Transcription Factor Family AT3G05760 79.167 8.75e-82 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04818 K12848 - gmx:100795833 311.612