Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04779 ATGGGTGCTAATTTGAATGCTGAATTATCAAAGAAAACTGTGTTTGGTGTAAAGGTTTGGGAAGTGATTGCAATTGTTGTTGCTTTGTCAATTGTAGTGATTCTATCTGTGGTTTCAATATGTCTTAGTTCAAGGAAGAAATCTAGGAGAGCTAGAAACAAGATTCCTGTTACTGAGATACCGAATGTGTCGAAGGAAATTAAGGAGGTTAGGGTTGAGCAAGTATCGACGAATGGATTTGCGCCGCGTGAGGGAATACTTTTGACCATTCATGATAAGTCTAGTGATAAAGAGTCTGATAAAGTTATGGTTCATTTAGATTTAGGGAAGAAGGTGAAGAATGGTGATAGTAGTAGTCATTCGGAGTCGTTTCATCAGTACATGGAGAAAGATGGTGGTGGGTCACATTCGCAATCGGGTGAAGAGGGTAGTTCGGGGACGGTTACTCTGTATAAGCAGTCTTCTTCTTCGTATCCTATAACAGCTCCTTCGCCTCTATCCGGTCTTCCGGAGTTTTCTCACTTAGGTTGGGGTCATTGGTTTACTTTGAGGGATCTAGAACTTGCTACGAGCCGTTTTGCGAAAGAAAATGTTCTCGGTGAAGGGGGTTATGGAGTTGTATACAAGGGACAGTTGATTAATGGGAGTCCAGTTGCAGTTAAAAAGATACTCAATAATATTGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGCCATGTCAGACACAAAAACTTGGTTCGCCTTTTGGGGTTCTGCGTTGAGGGAACTCACAGGATATTAGTCTACGAGTATGTCAATAATGGAAATTTGGAACAATGGCTTCATGGAGCTATGCGTCACCATGGCTATCTTACGTGGGAAGCACGTGTCAAGGTTCTCCTTGGCACAGCCAAAGCGCTTGCGTATTTGCACGAAGCAATTGAGCCAAAGGTGGTACACCGAGATATCAAATCAAGCAACATATTAATTGACGATGATTTCAATGCTAAGGTTTCTGATTTTGGTCTAGCCAAATTATTGGGCGCCGGGAAGAGTCATGTCACAACCCGAGTTATGGGAACCTTTGGATATGTGGCTCCTGAATACGCAAACACTGGCCTTCTAAATGAGAAAAGTGATGTTTATAGCTTCGGTGTTTTGCTATTAGAAGGAATTACCGGAAGAGATCCAGTTGATTATGGTCGTCCGACAAATGAAGTGAATCTAGTCGATTGGCTGAAGATGATGGTTGGAAGCCGGAGATCAGAAGAAGTGGTGGACCCAAACATTGAGGTGAAACCATCGACCAGAGCTTTGAAACGCGCTCTCTTAACTGCTTTAAGATGCGTTGATCCAGATTCCGAGAAAAGACCCAAGATGAGCCAAGTTGTACGAATGCTGGAGTCCGAGGAATACCCTTTAGCTAGAGAGGACCGAAGGCAAAGAAGAAGAAATCAAGGGGGTAGTGCAGAAATTGAATCGCAGAGGGAATATTCCGACACAGACAGGAGTGAGATTCAGGGTTCTAGAGAAGAGAGCAGAGGGTAG 1539 0.4321 MGANLNAELSKKTVFGVKVWEVIAIVVALSIVVILSVVSICLSSRKKSRRARNKIPVTEIPNVSKEIKEVRVEQVSTNGFAPREGILLTIHDKSSDKESDKVMVHLDLGKKVKNGDSSSHSESFHQYMEKDGGGSHSQSGEEGSSGTVTLYKQSSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATSRFAKENVLGEGGYGVVYKGQLINGSPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGFCVEGTHRILVYEYVNNGNLEQWLHGAMRHHGYLTWEARVKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPTNEVNLVDWLKMMVGSRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPLAREDRRQRRRNQGGSAEIESQREYSDTDRSEIQGSREESRG 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04779 512 MobiDBLite consensus disorder prediction 464 512 - -
Vivi6g04779 512 PANTHER OS01G0323000 PROTEIN 4 494 - -
Vivi6g04779 512 MobiDBLite consensus disorder prediction 113 150 - -
Vivi6g04779 512 Pfam Protein kinase domain 194 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04779 512 FunFam Putative receptor-like protein kinase 175 268 - -
Vivi6g04779 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Vivi6g04779 512 CDD STKc_IRAK 199 465 - -
Vivi6g04779 512 SMART serkin_6 193 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04779 512 Gene3D Phosphorylase Kinase; domain 1 175 268 - -
Vivi6g04779 512 ProSitePatterns Protein kinases ATP-binding region signature. 199 222 IPR017441 GO:0005524
Vivi6g04779 512 Gene3D Transferase(Phosphotransferase) domain 1 269 482 - -
Vivi6g04779 512 ProSiteProfiles Protein kinase domain profile. 193 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04779 512 MobiDBLite consensus disorder prediction 113 129 - -
Vivi6g04779 512 FunFam Putative receptor-like serine/threonine-protein kinase 269 480 - -
Vivi6g04779 512 SUPERFAMILY Protein kinase-like (PK-like) 177 470 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04779 Vivi-Chr6 151196591 151200517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04779 133 467 Trihelix Transcription Factor Family AT1G70460 46.765 5.72e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vivi6g04779 Pkinase 8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04779 - - gmx:100787014 852.432