Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04776 ATGGGCGGAGTTGGAGCAGCAGCACCGAATTCGGAGGTTCAATACACCACGGCCAAGATATCTGTATGGTGGGATATAGAAAACTGTCACGTTCCCAAGGGTTTCGATCCTCACCAAATCGCACAGAATATCAGTTCAGCGCTTGTGAGGATGAACTTCTGCGGTCCCGTTTCGATCTCTTCTTACGGCGATACGACTAGAATTCCTGCGTCGGTGCAGCATGCTCTCTCCAGCACCGGAATTTCCCTCAATCATGTTCCTGCTGGTGTGAAAGATGCAAGTGATAAGAAGATCCTTGTCGACATGCTGTTTTGGGCAGTGGACAACCCTGCACCTGCAAATTATTTATTGATTTCAGGTGATCGAGATTTCTCTAACGCCCTCCATCAATTGCGAATGAGGAGGTATAATATTCTTCTTGCACAACCTCAAAAAGCATCTGCTCCCCTAGTCGCAGCTGCTAAGAACGTATGGCTTTGGACTAGTCTCTTATCTGGAGGACCTCCATTATCTAATGGAGAATCACAACAGCTTGGTAATAGTAGCCTCCTATCATCTTCTGAAACTTTACAAGTTCCTGTTTCAAATGCCCCTCAGACACAACAACAAGGGGGTCCCTACTCTGAGGTTCATCCTGGAAATTCAAAATTTCAAAATGGAGGAAGGGGATTTGATTCTAGATATCAGGGGAGACCGAATTGGAGAAACCCAAATCAACCAAATGGGTCCAAAGCCATGAGTCCACCCCCAGTTGGTCCTCAAGATAACCGTAATAACGTAAACAATTATCGACCAGGCAACTATAATCCAAATGTTCCTCATAGCGGATCCGCCACAAATTTTGTCCGCCCCAATTCTGATCAGTTATGGAGCAATAATGGTAATCAACATCCTTATTCGCAACCATTAAGACCGAACGACTTTCCATTGCAGCCTCCTTTTGCACCTAGTAATTCATTTCCTCCAAATTCCCATACTTTTGCAACTACACCGGTGCCACCTAGGACAAGTGGCCCCAATTTTGGTACAGGATCAAATACATCTATGCCAAATATTGGTAATCTGAACATTTCAGGTCATCCTAATAATGCTCATAACCCCCGTACTGTTCCGCAACGGAATGGAGAGATGAAACCTAATCCTAAGGGTAGTGCTCCACTTCTGGTAAGATCAACGAATGAACAAAATGGACATATGGTGCATAGCAGTAGCACGCAAGGCTATCCACATGGTCCAGAATATCAACCTACATCGTCGGCAGCAATGGGTAATAATAATAAACTTCCTGCTAATGGTAAGTGGGGATCTTCAGGAATTTCTAAACCTTCTGAATATGTACAAGGCCTTATAGGGGTTGTATTACTTGCCCTTAACTCACTAAAAAATGCCAAGATGATGCCAACTGAGAAAAATATAACTGATAGCATCCGTTATGGAGATCCCAAGCATCGCAACACTGATGTTAAGAAGGCTCTGGAGAGTGCAATTGAGCAGCAGATGGTGGTGAAACAGAATTTAGGTACTCTGACGCTGTATGTTGGTAAGAATGATAAACTTTGGAAATGTGTAAATCCTTTAGGTGGAAATCCTAAACAGCACTCAAAAGAAATTTGGGATGAAATTCAAAATTTTTTAACAACCCCTGCTGGAAAATCAGCAATAATGGCTACACAGTGCAAGTATGAAGCAGGTATGCTGATAAAGAACATGTGCTTTAAAGATCTTGCTCTGGGCGACGTCCTTCAGATATTGAATATGTTGATTCTCCATAAAAAATGGATAGTTCATCAGCAGTCTGGCTGGCAACCACTCATCCTTACTCTTCCTGAGTCAAATCTTGATTCAGCAGGGGTCACCGCTGGTGCATAA 1869 0.4334 MGGVGAAAPNSEVQYTTAKISVWWDIENCHVPKGFDPHQIAQNISSALVRMNFCGPVSISSYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKNVWLWTSLLSGGPPLSNGESQQLGNSSLLSSSETLQVPVSNAPQTQQQGGPYSEVHPGNSKFQNGGRGFDSRYQGRPNWRNPNQPNGSKAMSPPPVGPQDNRNNVNNYRPGNYNPNVPHSGSATNFVRPNSDQLWSNNGNQHPYSQPLRPNDFPLQPPFAPSNSFPPNSHTFATTPVPPRTSGPNFGTGSNTSMPNIGNLNISGHPNNAHNPRTVPQRNGEMKPNPKGSAPLLVRSTNEQNGHMVHSSSTQGYPHGPEYQPTSSAAMGNNNKLPANGKWGSSGISKPSEYVQGLIGVVLLALNSLKNAKMMPTEKNITDSIRYGDPKHRNTDVKKALESAIEQQMVVKQNLGTLTLYVGKNDKLWKCVNPLGGNPKQHSKEIWDEIQNFLTTPAGKSAIMATQCKYEAGMLIKNMCFKDLALGDVLQILNMLILHKKWIVHQQSGWQPLILTLPESNLDSAGVTAGA 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04776 622 Gene3D - 12 162 - -
Vivi6g04776 622 MobiDBLite consensus disorder prediction 305 319 - -
Vivi6g04776 622 Pfam OST-HTH Associated domain 558 604 IPR025677 -
Vivi6g04776 622 MobiDBLite consensus disorder prediction 320 370 - -
Vivi6g04776 622 PANTHER LIMKAIN B LKAP 14 503 IPR024768 GO:0005777|GO:0010468
Vivi6g04776 622 MobiDBLite consensus disorder prediction 171 222 - -
Vivi6g04776 622 MobiDBLite consensus disorder prediction 386 437 - -
Vivi6g04776 622 MobiDBLite consensus disorder prediction 252 302 - -
Vivi6g04776 622 CDD PIN_limkain_b1_N_like 19 143 - -
Vivi6g04776 622 Pfam NYN domain 19 156 IPR021139 GO:0004540
Vivi6g04776 622 MobiDBLite consensus disorder prediction 171 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04776 Vivi-Chr6 151127257 151131724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04776 11 208 C2H2 Transcription Factor Family AT5G61190 67.500 1.95e-83 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04776 6 151127257 151131724 Vivi6g04776 6 151127257 151131724 ECH