Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04775 ATGGATGTTCATAACAAAATGGATGGTGATTCAGAAGAAGAAGAGGACTTCGCCACCAACATAGTAATCATGGGTGTCTCCATGTTACTTCTTGCATTGGTAATGATTGCTGTTTTTGCCAACCTAAGTGGTGGCGCCAAAGAAGAAAGAGATTTTAAGAGCATTAACTCTATCTGTGCTAAAACAGAATCACCAGAAGCTTGTCTTCATGTCTTGAAACATGTAGGCGAAAGAGCTCCGCCTTCGAATTATATTAACGCGGCGATTAATGCAACTCTTGAAGAATTAATGATAGTTAATATACCAAAACCTGATGCTGAGAAAAGCTTGACTCCTTTGCAGACGGAATCGTATAGAGATTGTTTGGAATTGTTGAGTATGGGAAAAGATGAGCTCGAACATTTGAACTTTATGGCGAATTCGAATTCGTCTATGGGATCAATAGAAATTATCAATAGTCTAAGCGCGATCATTTCGTATCAACAAACTTGTACTAATGAGTTGTTGAGAACTGATAACTTTGATATTTTGGGATATTCTTTGAAGATGCCTATTCTTCTTTCAAGGATTACATTAGCAATTGTTGATAATTTCGTTGAGAAGCCGGATTCGGACGAAAGGTTTAAGAAAACGGTCACCAGAGGAAACCGTCAAGCTATGGAAGTTGATCATGAGGACAATAGACTAATCGTTGCTCAAGACGGCCGCGGCCATTTTACAACGATAACCGAATCAATCAATGCTTGCGTGAGGAATATAGAATGTTCATGTGTTATTTATGTGATGAAAGGTGTGTATAAAGAGAGAGTTGTGATACCTCAGAGTTTAGAGAAAGTGTTCATGTATGGCGATGGCCCTACGCAAACCGTTGTGACCGGGCTCAACACGAGAGGCTCGACGATTGTTACAACGCCTTTTCGTTCGGCTAGTTTTGTGGTGAAAGGGAAAGGATTCCACTGCAAAGATATGGGATTCACTGCACCTGCTAACATAGCAGGTGCACCTGCACTTCTTGTGTTTTGTGATCATGCAGCATTCTTCAACTGCAAAATCGAAGGAAAAGAAGGAAGTTTATACGCGGTGGCGCATCGCCAATTCTATGGAAACTGCGAAATTCATGGAAGTGTAGACATTATAAAAGGCGACTCAGCGACTATAATTCAAAACTCGCGAATCATAGTGAAGCGTCAAATTTCTCCTATTGTTCCAAGGAAAAAAGTTGTGAGTTTTCAATCACGAGTAGACAAGCATGAGAGCACTGGTTTTGTGATGCAAAACTGCAGCATTGTAGCAGAAGAAGGCGAAACCGATGATAATAATAATAGTCTTATTGGTTCGACGTGTTTGGGAATACCGTGTAACGAACATTCGAGAACAGTCGTGATGGAATCGTTTCTCGGCGACGTGATTCGTCCGAGAGGTTGGTGTAAATGGAGTGATAATTATGGAGTTGATACTGCAAGTTTTATAGAGTATAATAATAGAGGAATTGGTGCAATAACTCGTAAGAGGGTGCATTGGGAGAGTTATAGAGAAGTTTCTCAGAAACAGAAAAGTGAAATGGTGAGGTTTACAGCTGATAAGTTTATTCAAGCTGATCAATGGTTGAAAAATACTGGTATTCCATATGAATCTGGACTTTTCTTTCCTAAATAG 1656 0.3992 MDVHNKMDGDSEEEEDFATNIVIMGVSMLLLALVMIAVFANLSGGAKEERDFKSINSICAKTESPEACLHVLKHVGERAPPSNYINAAINATLEELMIVNIPKPDAEKSLTPLQTESYRDCLELLSMGKDELEHLNFMANSNSSMGSIEIINSLSAIISYQQTCTNELLRTDNFDILGYSLKMPILLSRITLAIVDNFVEKPDSDERFKKTVTRGNRQAMEVDHEDNRLIVAQDGRGHFTTITESINACVRNIECSCVIYVMKGVYKERVVIPQSLEKVFMYGDGPTQTVVTGLNTRGSTIVTTPFRSASFVVKGKGFHCKDMGFTAPANIAGAPALLVFCDHAAFFNCKIEGKEGSLYAVAHRQFYGNCEIHGSVDIIKGDSATIIQNSRIIVKRQISPIVPRKKVVSFQSRVDKHESTGFVMQNCSIVAEEGETDDNNNSLIGSTCLGIPCNEHSRTVVMESFLGDVIRPRGWCKWSDNYGVDTASFIEYNNRGIGAITRKRVHWESYREVSQKQKSEMVRFTADKFIQADQWLKNTGIPYESGLFFPK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04775 551 CDD PMEI-like_3 57 198 - -
Vivi6g04775 551 SMART PMEI_2 50 194 IPR006501 GO:0004857
Vivi6g04775 551 Pfam Plant invertase/pectin methylesterase inhibitor 54 168 IPR006501 GO:0004857
Vivi6g04775 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 198 IPR035513 -
Vivi6g04775 551 SUPERFAMILY Pectin lyase-like 228 545 IPR011050 -
Vivi6g04775 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 198 IPR035513 -
Vivi6g04775 551 Gene3D - 226 549 IPR012334 -
Vivi6g04775 551 PANTHER PECTINESTERASE 29 537 - -
Vivi6g04775 551 Pfam Pectinesterase 229 533 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04775 Vivi-Chr6 151122545 151124299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04775 53 548 Carbohydrate Esterase AT2G26450 32.000 3.51e-74 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04775 K01051 - gmx:102665007 620.542