Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04767 ATGGATTACCGGTGGACCAAAGGTAAGCATGAAACTGGTGGCCGTGACAGGAAGCAATTTACGAAGGATCGGGCTTATGAGGACTCCCTTACTGAGGATTTTCGCATGCCGATTAATCAAAGGCCGACCGAAAACGTTGATCTGGATAATGTTGAACAAGCATCTCTGGACACTCATATAAATTCGTCTAATATTGGTTTTAAGCTTCTTCAAAAGATGGGGTGGAAAGGAAAGGGTCTTGGCAAAGATGAACAAGGAATTGTTGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGGTCGGTAAACAGGAAGAAGATGATTTTTTCACTGCAGAAGAAAATGTTCAGAGAAAAAAACTCGATATTGAGTTGGAGGAGACAGAGGAGAATGTGAGGAAACGTGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAAATCCGGAAGGTGTTTTATTGTGAATTATGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGGAAGCGTTTCAAGGAAATGAAGGAAATGCATGGTAGCAGTAGTCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAAAGAATTGGCCAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAGCAAGAGTCTGGCTCAACACCAGTTTCAGTTTCCTCCGAATCTAGGACTGCTACTGCGCTAACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGCTTTTCTTCTAAAGGATTTGCTTCCAAGAACACGGTTGGTGCCAAGAAGCAAAATGTTCCAAAGAAGCAAAATATTCCAGTGGCCTCTATATTTGGAAACGACAGTGATGAAGAGTAA 909 0.4246 MDYRWTKGKHETGGRDRKQFTKDRAYEDSLTEDFRMPINQRPTENVDLDNVEQASLDTHINSSNIGFKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPRLGVGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKEMKEMHGSSSRDDRQKREQQRQEKELAKFAQIADAQKQQRLQLQQESGSTPVSVSSESRTATALTDQEQRNTLKFGFSSKGFASKNTVGAKKQNVPKKQNIPVASIFGNDSDEE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04767 302 SUPERFAMILY beta-beta-alpha zinc fingers 138 192 IPR036236 -
Vivi6g04767 302 SMART G-patch_5 60 105 IPR000467 GO:0003676
Vivi6g04767 302 ProSiteProfiles G-patch domain profile. 62 107 IPR000467 GO:0003676
Vivi6g04767 302 Coils Coil 112 139 - -
Vivi6g04767 302 MobiDBLite consensus disorder prediction 275 302 - -
Vivi6g04767 302 Pfam Zinc-finger double-stranded RNA-binding 157 184 IPR022755 -
Vivi6g04767 302 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 302 - -
Vivi6g04767 302 MobiDBLite consensus disorder prediction 229 256 - -
Vivi6g04767 302 Pfam G-patch domain 63 103 IPR000467 GO:0003676
Vivi6g04767 302 MobiDBLite consensus disorder prediction 1 23 - -
Vivi6g04767 302 ProSitePatterns Zinc finger C2H2 type domain signature. 159 181 IPR013087 -
Vivi6g04767 302 MobiDBLite consensus disorder prediction 275 294 - -
Vivi6g04767 302 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04767 Vivi-Chr6 150964778 150968835 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04767 1 302 C2H2 Transcription Factor Family AT5G26610 62.866 7.85e-122 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04767 - - gmx:100793206 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04767 6 150964778 150968835 Vivi6g04767 6 150964778 150968835 ECH