Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04760 ATGGGAGGAGTTGGAGCAGCAGCAACAAACTCGGATGATCGGTACACCTTTGAGAAAGTATCTGTTTGGTGGGATCTAGAAACCTTCAAAGTCCCAAATGATGTAGATCCTTGCCATGTTTCAGCTAATGTCCATTCGGAACTTATTCGAATGAACTACCATGGTTCCGTTTCCTTCTTCTGCTACGCCGACGTAAATAACCTTCCTGATTCTGTAGCCATTGCTCTCCAATCCACCGGAGTTCACATCACACATGTTCCAGTCGCCGATGACAAAGATGTAATTTCTAAGAGGATCCTTGTCGACATGATGCTCTGGGCAAAGGACAACCCTGCACCTGCAAGTTATTTATTGATTTCGGGTGGTCACGATTTTTCTTATGGCATCTATCGACTCCGATTGATGAACTATAATATTCTACTTGCTACACAACCCCAAAATGTATCTTTAAGCCTACTTGTGGCTACTAAGAAGCTATGGGTTTGGACTCGTCTTGCAGCTGGAGGACCTTCATTATCCGATGAAGAATACGAACAGCTCTTATCTGAGATGCAAGCCAAAGAAAACTCAGAGAAGTAA 579 0.4352 MGGVGAAATNSDDRYTFEKVSVWWDLETFKVPNDVDPCHVSANVHSELIRMNYHGSVSFFCYADVNNLPDSVAIALQSTGVHITHVPVADDKDVISKRILVDMMLWAKDNPAPASYLLISGGHDFSYGIYRLRLMNYNILLATQPQNVSLSLLVATKKLWVWTRLAAGGPSLSDEEYEQLLSEMQAKENSEK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04760 192 CDD PIN_limkain_b1_N_like 19 143 - -
Vivi6g04760 192 PANTHER LIMKAIN B LKAP 18 167 IPR024768 GO:0005777|GO:0010468
Vivi6g04760 192 Pfam NYN domain 19 155 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04760 Vivi-Chr6 150843568 150844628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04760 15 176 C2H2 Transcription Factor Family AT5G61190 50.617 2.14e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04760 - - vvo:131612763 392.889