Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04759 ATGATGCCTCTACATGAATTTTACAGTATGTCTAAACAAAAAGTTGATCATAAAGAGATAAACAACTCTCATACTCTTCCATCTTCCTCAACCATAGTGAATTTCACCAATTTTGCAAAACCTATTGCTATTGTGAAGGCTAATCTTCAGAACATTGGTTTGTCTTCTTCAAAATCGGAAAGTGTTGGAGTAAAGAACAAAGATGAAGCTTTAATAGGAAGCAATCCTTGCAAATCAACAAAAGTTGATTTATGTGGAGAAAGCTGTCATCAGGCAGTGGAGCCATCAACAGTTGATTTGAAATATTTGGAGCCGAAATCTTCCGAGCAGGAAGACGCTGTTCCAACTCCTGCTTGCAAAGAAGATGTGTCCATGGTTGATCGAACTTCAAATCAAGTTTTCGCTGAAAGTGGTAGAAATTATCAAGAAGATGTCGAAAAAAGCACGAAACCAATAGAAGTATCTTCATCTGTTTGCTCGGACAATGGCGCATATAGAGATTCAGATTACCCGTATAAAAATTTGAAGGAAAAAAATATATACTCTGAGGATTCTGAGTGGCACAGCAACAGTGAAGACGTTGACGATGAATCGGTTGGTATTAAAAGGACCGCTCATGGACGAAGAGGTTTTGGCTCGAAGAGAAACCGTTCAGCTGAAGTGCATAGTCTATCTGAAAGGAGACGAAGAGGCGCGATCAATGAGAAGATGCGGACATTGCAAGAACTCATACCGAATAGCAATAAGGTTGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTGAAAACACTTCAACTCCAACTTCAATTTATGTCAATGAGAGGCGGCAGTTCATACTCGCCGATGATGTTACCTGTGGGAATGCAGCACATGCACATGTCACTGTCTCCATTTTCACCCATGAGTGTTGCCATGCAAATGAGGTTAGGGGTGCCTCAATTTCAAGGAACTCATATACCAATTGCACATGCATATGGACTTTCTGCTTTACATGGAATGGCAGCAAGACCTAATCCTCAAATGTTCGGACTTCCTGACCCGCGACTCCACATGCCAATGCCGCGCGCTCCAATGTTTTCTTATCCTAGAGAGTCTGTTATGAACTCAGCAAACCCAATTGATGGATCTGAACAATCAAATTTGGTTCTCAATAGTGGTCGTGTTTCATCGACGAATGACAAAGCAGGTTTTACTCTTGGTATCGAAGAAAACCCCATGACTGATAAATCTAATGAGTAA 1245 0.408 MMPLHEFYSMSKQKVDHKEINNSHTLPSSSTIVNFTNFAKPIAIVKANLQNIGLSSSKSESVGVKNKDEALIGSNPCKSTKVDLCGESCHQAVEPSTVDLKYLEPKSSEQEDAVPTPACKEDVSMVDRTSNQVFAESGRNYQEDVEKSTKPIEVSSSVCSDNGAYRDSDYPYKNLKEKNIYSEDSEWHSNSEDVDDESVGIKRTAHGRRGFGSKRNRSAEVHSLSERRRRGAINEKMRTLQELIPNSNKVDKASMLDEAIEYLKTLQLQLQFMSMRGGSSYSPMMLPVGMQHMHMSLSPFSPMSVAMQMRLGVPQFQGTHIPIAHAYGLSALHGMAARPNPQMFGLPDPRLHMPMPRAPMFSYPRESVMNSANPIDGSEQSNLVLNSGRVSSTNDKAGFTLGIEENPMTDKSNE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04759 414 SMART finulus 223 272 IPR011598 GO:0046983
Vivi6g04759 414 CDD bHLH_AtPIF_like 217 278 IPR047265 -
Vivi6g04759 414 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983
Vivi6g04759 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 277 IPR036638 GO:0046983
Vivi6g04759 414 FunFam Basic helix-loop-helix transcription factor 212 275 - -
Vivi6g04759 414 Gene3D - 212 275 IPR036638 GO:0046983
Vivi6g04759 414 Pfam Helix-loop-helix DNA-binding domain 221 267 IPR011598 GO:0046983
Vivi6g04759 414 PANTHER TRANSCRIPTION FACTOR PIF3 17 375 IPR044273 GO:0003700|GO:0006355
Vivi6g04759 414 MobiDBLite consensus disorder prediction 213 227 - -
Vivi6g04759 414 MobiDBLite consensus disorder prediction 207 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04759 Vivi-Chr6 150810522 150812437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04759 31 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 39.773 5.32e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g04759 HLH 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04759 K12126 - gmx:100794974 347.051