Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04758 ATGGGAAGACACTCTTGTTGCTACAAGCAGAAGCTTCGTAAAGGTCTTTGGTCACCAGAAGAAGATGAAAAGCTTTTGAATTATATCACCAAACATGGTCATGGATGTTGGAGTTCTGTTCCAAAACTAGCTGGTTTGCAGAGATGTGGTAAGAGTTGTAGATTGAGATGGATAAATTACCTTAGACCAGATTTGAAGAGAGGGGCATTCTCAATAGAAGAAGAAAATTCTATAATTGAACTTCATGCACTTCTTGGCAACAGGTGGTCGCAGATTGCGGCTCAATTACCAGGTAGAACTGATAATGAGATAAAGAATCTATGGAATTCAAATTTGAAGAAGAAGCTAAGACAAAAAGGAATTGATCCAAACACACACCAAACGATTTCGGAATCTGTTGAAAACAATGACAAGGAGAAGGAGAAGCAAGTTGAGGCGGAGAAAAGCAATAATCAGATTCAGAAAAGCTCTTTTGGATCCAATGAAGTGAACTCAATTCCTATGGATAATAATAACACTAATTATCCAGTTGAAAGGAATTCTTCAAGTAATTCAAAAATCAACAACTCTTCATGTTTCATATCTTCTGAAAATATGGTTGGATTAGGATCATCATCATCATATCTCTCTTTTCAACAACCCAACTATGGAATCAACAACATAGCTCTATCACCAAATTCCAACAACAATTCATCACTTTGTTTCATACCAAGTACTAGTGCCGGTTCAACTTCCATGTCAGAACTCAATTCTTTAACCATGTTCCAATCAATTCAAAACTGGGAATTCAACAACAACAACAACGGAAGCAAAAGCAGCAATGGAAGCATTAGTAGCAACAACAACAACAACAACAATAACTTCGATCAAATTCAAGATCATAATCAAGTATTAGAAGACATTAAATGGTCTGAATATCTAAACACTACTCCATTTTTTCTCGGAAACAACAACAGCAACAGCAACAACGACAACAACAACACAATTCAACAGCATCATAGTACAGCAATCTACAGCGATGATGAGATTAAACAAGAAATGGGATTCATTCATAATTCAGATATATATAGCAACAACAACAAAGATTTTCAGAGATTCTCACTCGCTTTTGGACAAACACTTTAG 1125 0.3582 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSIEEENSIIELHALLGNRWSQIAAQLPGRTDNEIKNLWNSNLKKKLRQKGIDPNTHQTISESVENNDKEKEKQVEAEKSNNQIQKSSFGSNEVNSIPMDNNNTNYPVERNSSSNSKINNSSCFISSENMVGLGSSSSYLSFQQPNYGINNIALSPNSNNNSSLCFIPSTSAGSTSMSELNSLTMFQSIQNWEFNNNNNGSKSSNGSISSNNNNNNNNFDQIQDHNQVLEDIKWSEYLNTTPFFLGNNNSNSNNDNNNTIQQHHSTAIYSDDEIKQEMGFIHNSDIYSNNNKDFQRFSLAFGQTL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04758 374 CDD SANT 69 112 IPR001005 -
Vivi6g04758 374 MobiDBLite consensus disorder prediction 149 168 - -
Vivi6g04758 374 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vivi6g04758 374 Gene3D - 68 155 - -
Vivi6g04758 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vivi6g04758 374 CDD SANT 17 61 IPR001005 -
Vivi6g04758 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vivi6g04758 374 PANTHER MYB DOMAIN PROTEIN 55 1 313 - -
Vivi6g04758 374 FunFam Myb transcription factor 11 67 - -
Vivi6g04758 374 SMART sant 13 63 IPR001005 -
Vivi6g04758 374 SMART sant 66 114 IPR001005 -
Vivi6g04758 374 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi6g04758 374 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi6g04758 374 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi6g04758 374 MobiDBLite consensus disorder prediction 132 148 - -
Vivi6g04758 374 Gene3D - 11 67 - -
Vivi6g04758 374 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi6g04758 374 MobiDBLite consensus disorder prediction 263 289 - -
Vivi6g04758 374 FunFam MYB transcription factor 68 129 - -
Vivi6g04758 374 MobiDBLite consensus disorder prediction 118 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04758 Vivi-Chr6 150759242 150760976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04758 1 374 MYB Transcription Factor Family AT1G09540 46.717 7.73e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g04758 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04758 K09422 - gmx:778182 342.428