Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04739 ATGGCTTCCATAACTGTAATTGGCGCTTCCTCCACATGCAAACTCCCCTCTCTCGAACTCTACAAAAAGTATAAACTAACTTCCATTTCCACAGTTAAACTCCACTCTTTCGACAGTAACAAATCCCGCCACGTCACCAACAACCTCCTCCTTAGACACAACCGTCTCGCCAATTTCAGTTCCTCCGATAGGTTTCTTCCCTCCGCCGTCGCGACTCCGAATTCCTCCTCCTCTTCGCTTCTCAGCGACGAAGCATTTCAAGGATTAGGCTCTGATTTCGAAGGTGATGAAGATGAGGATTTTCCTTCTCGAACTGCTTCGCTTAACGCTGATGAACTTGACATTTCGAAACTTGATTTGCCTTCGCAACTTGTTGGTTCGCTCCGTGAGAGGGGGATTACGCAGCTTTTTCCTATTCAGAGAGCGGTGTTAGTTCCTGCACTTCAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGAACAGGGAAGACATTGGCTTTTGGAATTCCTATTATTAATGGTCTCGATGATGGTGAGGGTGAGGATTCAGGTCGTTACAGTAACAGGCGACTTCCTAGAGCTTTGGTACTTGCACCTACCAGGGAGTTAGCGAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCACCTTATCTCAAAACAGTTTGTATTTATGGAGGTGTTTCTTATACTTCTCAGCAGGGTGCACTTTCACGTGGGGTTGATGTAGTTGTTGGAACGCCCGGTAGACTGATTGATCTCATCAACGGGAACACACTTAAGTTGAGCGAAGTTGAGTATTTGGTGCTTGATGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGGCTGTGGAAGTCATTTTGGAAAAGCTTCCAGCTAAGAGACAGAGCATGCTTTTTTCTGCAACCATGCCTAGTTGGGTGAAGAAATTGGCCAGAAAATATTTGGACAATCCGTTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTGTACGCTATATCAGCAACTTCCACTTCTAAGAGAACAATTCTTTCTGATCTTATTACGGTTTATGCAAAGGGCGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATCACTTCTGAAGCACTGCATGGCGATATATCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAGTTTACAGTGCTTGTTGCCACTGATGTGGCATCTCGTGGACTTGATATCCCCAATGTTGATTTGATTATCCATTACGAGCTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGCCGTGCGGGAAAGCTAGGTTCTGCCATTCTGATGTATACGGGTAACCAGAGAAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACGCACCGTCTATGGAGGATGTTTTGGAGGCATCTGCCGATCAAGTTGTTGTCACACTTAATGGAGTCCATCCCGAGTCTATTGCATTTTTCACCCCTACTGCACAGAAACTGATCGAAGAAAAAGGAACAGATGCCCTTGCAGCTGCACTGGCACAGCTGAGTGGATTCTCCAAACCTCCGTCTTCCCGGTCTCTCATCACCCATGAACAGGGATGGGTTACATTGCAATTAACCCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGCAAGAGCAGTCACCGGGTTTCTTTCCGATGTATATTCCAAAGCTGCTGACAATGTTGGAAAAATACATTTAATTGCAGATGAAATGGTTCAAGGAGCTGTTTTTGATCTTCCAGACGACATTGCTAAAGAGTTACTTGAGAAGGACATACCATCTGGAAACACTCTTTCCAAAGTCGCTAAGTTACCTCCTTTGCAAGATGATGGACCTCCAAGTGATTTCTACGGGAAGTTTTCCGATAGAGAACGAAGTAGCCGAAGAGGTTCAAGGGATGGTAGAGGTTTTAGATCCTCAAGGGGATGGGATGGAGGCCGAGGCTCTAGTGACGACTTTGGCGGCTCAAGGAGGGGTGGCAGAGGCTCTAATGATGACTTTGGTGACTCAAGGAGGGGTGGCAGAGGCTCTAATGATGACTTTGGTGACTCAAGGAGGGGTGGCAGAAGTAGTTTTAAATCTGGCAACAGCTGGTCCAAACCTGAAAGAAGCAGCCGGGATGATTGGCTAATTGGAGGCAGACAATCAAGCAGGTCTCCATCATCCAACAGAAGCTTTGAAGGGGCCTGTTTTAGTTGTGGGGAATCTGGGCATCGAGCGTCGGACTGTCCAAACAGGCTAGGCGGTTCTTTTTAA 2361 0.4524 MASITVIGASSTCKLPSLELYKKYKLTSISTVKLHSFDSNKSRHVTNNLLLRHNRLANFSSSDRFLPSAVATPNSSSSSLLSDEAFQGLGSDFEGDEDEDFPSRTASLNADELDISKLDLPSQLVGSLRERGITQLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLDDGEGEDSGRYSNRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCIYGGVSYTSQQGALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEAVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGSAILMYTGNQRRTVRSLERDVGCKFEFVNAPSMEDVLEASADQVVVTLNGVHPESIAFFTPTAQKLIEEKGTDALAAALAQLSGFSKPPSSRSLITHEQGWVTLQLTRDSENSQRYFSARAVTGFLSDVYSKAADNVGKIHLIADEMVQGAVFDLPDDIAKELLEKDIPSGNTLSKVAKLPPLQDDGPPSDFYGKFSDRERSSRRGSRDGRGFRSSRGWDGGRGSSDDFGGSRRGGRGSNDDFGDSRRGGRGSNDDFGDSRRGGRSSFKSGNSWSKPERSSRDDWLIGGRQSSRSPSSNRSFEGACFSCGESGHRASDCPNRLGGSF 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04739 786 Pfam Zinc knuckle 764 780 IPR001878 GO:0003676|GO:0008270
Vivi6g04739 786 Gene3D - 752 785 - -
Vivi6g04739 786 CDD SF2_C_DEAD 336 465 - -
Vivi6g04739 786 Pfam DEAD/DEAH box helicase 137 311 IPR011545 GO:0003676|GO:0005524
Vivi6g04739 786 FunFam ATP-dependent RNA helicase RhlE 105 325 - -
Vivi6g04739 786 MobiDBLite consensus disorder prediction 651 675 - -
Vivi6g04739 786 FunFam Nucleolar RNA helicase II 344 534 - -
Vivi6g04739 786 Pfam GUCT (NUC152) domain 543 643 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vivi6g04739 786 Pfam Helicase conserved C-terminal domain 348 456 IPR001650 -
Vivi6g04739 786 MobiDBLite consensus disorder prediction 631 786 - -
Vivi6g04739 786 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 322 IPR014001 -
Vivi6g04739 786 SMART ultradead3 132 339 IPR014001 -
Vivi6g04739 786 MobiDBLite consensus disorder prediction 745 764 - -
Vivi6g04739 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 477 IPR027417 -
Vivi6g04739 786 SUPERFAMILY Retrovirus zinc finger-like domains 752 783 IPR036875 GO:0003676|GO:0008270
Vivi6g04739 786 ProSiteProfiles Zinc finger CCHC-type profile. 765 780 IPR001878 GO:0003676|GO:0008270
Vivi6g04739 786 SMART c2hcfinal6 764 780 IPR001878 GO:0003676|GO:0008270
Vivi6g04739 786 SMART helicmild6 376 456 IPR001650 -
Vivi6g04739 786 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 497 IPR001650 -
Vivi6g04739 786 CDD DEADc 124 323 - -
Vivi6g04739 786 Gene3D - 114 326 IPR027417 -
Vivi6g04739 786 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 107 650 - -
Vivi6g04739 786 CDD GUCT_Hera 550 630 - -
Vivi6g04739 786 Gene3D - 337 534 IPR027417 -
Vivi6g04739 786 MobiDBLite consensus disorder prediction 693 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04739 Vivi-Chr6 150410170 150415671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04739 95 478 Eukaryotic Initiation Factors Gene Family AT1G72730 35.641 1.69e-63 216