Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04738 ATGGCTTCCATAACTGTAATTGGCGCTTCCTCCACATGCAAACTCCCCTCTCTCGAACTCTACAAAAAGTATAAACTAACTTCCATTTCCACAGTTAAACTCCACTCTTTCGACAGTAACAAATCCCGCCACGTCACCAACAACCTCCTCCTTAGACACAACCGTCTCGCCAATTTCAGTTCCTCCGATAGGTTTCTTCCCTCCGCCGTCGCGACTCCGAATTCCTCCTCCTCTTCGCTTCTCAGCGACGAAGCATTTCAAGGATTAGGCTCTGATTTCGAAGGTGATGAAGATGAGGATTTTCCTTCTCGAACTGCTTCGCTTAACGCTGATGAACTTGACATTTCGAAACTTGATTTGCCTTCGCAACTTGTTGGTTCGCTCCGTGAGAGGGGGATTACGCAGCTTTTTCCTATTCAGAGAGCGGTGTTAGTTCCTGCACTTCAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGAACAGGGAAGACATTGGCTTTTGGAATTCCTATTATTAATGGTCTCGATGATGGTGAGGGTGAGGATTCAGGTCGTTACAGTAACAGGCGACTTCCTAGAGCTTTGGTACTTGCACCTACCAGGGAGTTAGCGAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCACCTTATCTCAAAACAGTTTGTATTTATGGAGGTGTTTCTTATACTTCTCAGCAGGGTGCACTTTCACGTGGGGTTGATGTAGTTGTTGGAACGCCCGGTAGACTGATTGATCTCATCAACGGGAACACACTTAAGTTGAGCGAAGTTGAGTATTTGGTGCTTGATGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGGCTGTGGAAGTCATTTTGGAAAAGCTTCCAGCTAAGAGACAGAGCATGCTTTTTTCTGCAACCATGCCTAGTTGGGTGAAGAAATTGGCCAGAAAATATTTGGACAATCCGTTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTGTACGCTATATCAGCAACTTCCACTTCTAAGAGAACAATTCTTTCTGATCTTATTACGGTTTATGCAAAGGGCGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATCACTTCTGAAGCACTGCATGGCGATATATCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAGTTTACAGTGCTTGTTGCCACTGATGTGGCATCTCGTGGACTTGATATCCCCAATGTTGATTTGATTATCCATTACGAGCTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGCCGTGCGGGAAAGCTAGGTTCTGCCATTCTGATGTATACGGGTAACCAGAGAAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACGCACCGTCTATGGAGGATGTTTTGGAGGCATCTGCCGATCAAGTTGTTGTCACACTTAATGGAGTCCATCCCGAGTCTATTGCATTTTTCACCCCTACTGCACAGAAACTGATCGAAGAAAAAGGAACAGATGCCCTTGCAGCTGCACTGGCACAGCTGAGTGGATTCTCCAAACCTCCGTCTTCCCGGTCTCTCATCACCCATGAACAGGGATGGGTTACATTGCAATTAACCCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGCAAGAGCAGTCACCGGGTTTCTTTCCGATGTATATTCCAAAGCTGCTGACAATGTTGGAAAAATACATTTAATTGCAGATGAAATGGTTCAAGGAGCTGTTTTTGATCTTCCAGACGACATTGCTAAAGAGTTACTTGAGAAGGACATACCATCTGGAAACACTCTTTCCAAAGTCGCTAAGTTACCTCCTTTGCAAGATGATGGACCTCCAAGTGATTTCTACGGGAAGTTTTCCGATAGAGAACGAAGTAGCCGAAGAGGTTCAAGGGATGGTAGAGGTTTTAGATCCTCAAGGGGATGGGATGGAGGCCGAGGCTCTAGTGACGACTTTGGCGGCTCAAGGAGGGGTGGCAGAGGCTCTAATGATGACTTTGGTGACTCAAGGAGGGGTGGCAGAAGTAGTTTTAAATCTGGCAACAGCTGGTCCAAACCTGAAAGAAGCAGCCGGGATGATTGGCTAATTGGAGGCAGACAATCAAGCAGGTCTCCATCATCCAACAGAAGCTTTGAAGGGGCCTGTTTTAGTTGTGGGGAATCTGGGCATCGAGCGTCGGACTGTCCAAACAGGCTAGGCGGTTCTTTTTAA 2319 0.4511 MASITVIGASSTCKLPSLELYKKYKLTSISTVKLHSFDSNKSRHVTNNLLLRHNRLANFSSSDRFLPSAVATPNSSSSSLLSDEAFQGLGSDFEGDEDEDFPSRTASLNADELDISKLDLPSQLVGSLRERGITQLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLDDGEGEDSGRYSNRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCIYGGVSYTSQQGALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEAVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGSAILMYTGNQRRTVRSLERDVGCKFEFVNAPSMEDVLEASADQVVVTLNGVHPESIAFFTPTAQKLIEEKGTDALAAALAQLSGFSKPPSSRSLITHEQGWVTLQLTRDSENSQRYFSARAVTGFLSDVYSKAADNVGKIHLIADEMVQGAVFDLPDDIAKELLEKDIPSGNTLSKVAKLPPLQDDGPPSDFYGKFSDRERSSRRGSRDGRGFRSSRGWDGGRGSSDDFGGSRRGGRGSNDDFGDSRRGGRSSFKSGNSWSKPERSSRDDWLIGGRQSSRSPSSNRSFEGACFSCGESGHRASDCPNRLGGSF 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04738 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 477 IPR027417 -
Vivi6g04738 772 SMART c2hcfinal6 750 766 IPR001878 GO:0003676|GO:0008270
Vivi6g04738 772 Pfam DEAD/DEAH box helicase 137 311 IPR011545 GO:0003676|GO:0005524
Vivi6g04738 772 CDD SF2_C_DEAD 336 465 - -
Vivi6g04738 772 SUPERFAMILY Retrovirus zinc finger-like domains 738 769 IPR036875 GO:0003676|GO:0008270
Vivi6g04738 772 MobiDBLite consensus disorder prediction 651 675 - -
Vivi6g04738 772 FunFam Nucleolar RNA helicase II 344 534 - -
Vivi6g04738 772 Pfam GUCT (NUC152) domain 543 643 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vivi6g04738 772 ProSiteProfiles Zinc finger CCHC-type profile. 751 766 IPR001878 GO:0003676|GO:0008270
Vivi6g04738 772 Pfam Zinc knuckle 750 766 IPR001878 GO:0003676|GO:0008270
Vivi6g04738 772 Gene3D - 114 326 IPR027417 -
Vivi6g04738 772 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 322 IPR014001 -
Vivi6g04738 772 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 107 650 - -
Vivi6g04738 772 SMART ultradead3 132 339 IPR014001 -
Vivi6g04738 772 FunFam ATP-dependent RNA helicase RhlE 105 325 - -
Vivi6g04738 772 Pfam Helicase conserved C-terminal domain 348 456 IPR001650 -
Vivi6g04738 772 Gene3D - 738 771 - -
Vivi6g04738 772 SMART helicmild6 376 456 IPR001650 -
Vivi6g04738 772 MobiDBLite consensus disorder prediction 632 772 - -
Vivi6g04738 772 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 497 IPR001650 -
Vivi6g04738 772 MobiDBLite consensus disorder prediction 731 750 - -
Vivi6g04738 772 CDD DEADc 124 323 - -
Vivi6g04738 772 MobiDBLite consensus disorder prediction 693 708 - -
Vivi6g04738 772 CDD GUCT_Hera 550 630 - -
Vivi6g04738 772 Gene3D - 337 534 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04738 Vivi-Chr6 150410170 150415671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04738 95 478 Eukaryotic Initiation Factors Gene Family AT1G72730 35.641 1.25e-63 217