Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04717 ATGTTTGATTCTACTTCCTCTTACATTGATTTTCAATCCTCACAAACCAAGAACAATACTCACATGCTCACATATTTACCACCATTCAAAAAACCAAGAGTGGAAACTTCAAATCATTACTTAGGAGGGTGTGAATATCAAAAAACAGAAAAAGTGAACTTCTCAAACTTTTCTATACCTAAAGTGTTTCTCAAATCAACTCATCAAGGGAAAGAATCAAAAGCCATTGCTTCTACAAAATTCCAACAACAAAAGCCTTTAACACAATTGCTACCAACCATTGATGAACATTCTGAAGTTTCTGATAGCCATAGTAGTGCTTTTGGAATTAGAGAGAAGAGAAAAGCTAGTGATATTGAAGGATATGATGAACCATCATCTTCTGCATGTTCACTTGAAGCCTCAAATGATTCAAACTTTGGTTTCGGAAATCATGAGGACAATTATGACTCACCATATTTTAGTGATGATGAAGAAGAAACCTCGGAAAATATGTTGAAAGAGAAGCCAGCTCGTGAAGGAAAAAGAGTCAAGAGAAGCTACAAGAATGCAAAAAGTCATAATTTAACTCAAAGGAAGAGAAGAGATAAAATCAACGAGAAAATTCATACATTGAAAAAGCTCATACCAAATTGCAATAAGATGGACAAGGCTTCAATGCTTGATGATGCCATTGATTATCTTAAAACCCTAAAGCTTCAGTTACAGATTATGACAATGGGTAGAGGACTTTGTATGCCACTTAATCATCTTATGATGTTGCCAGCACATCATATGAGTATGAGTATGAATATGAATGCACAACATTTAATGGGTTTTAGGCCAGAGGTACAGTTTCCTATTCCACAAATGAGTAATGGTGTCACAGACCACAATAATAACAACATCAGAGTTCAGATGTTTGGTTTTTCCAACCAATTACTACCACCACCGATGTCAATTCATAATGCACCTTTCACACTTCCTATCATCGGAAACTCTTCCACTGCAGCAAACTCTTTTGGTGACCAGAATCAACCTAGCAAGACATGTGGCTAA 1038 0.3593 MFDSTSSYIDFQSSQTKNNTHMLTYLPPFKKPRVETSNHYLGGCEYQKTEKVNFSNFSIPKVFLKSTHQGKESKAIASTKFQQQKPLTQLLPTIDEHSEVSDSHSSAFGIREKRKASDIEGYDEPSSSACSLEASNDSNFGFGNHEDNYDSPYFSDDEEETSENMLKEKPAREGKRVKRSYKNAKSHNLTQRKRRDKINEKIHTLKKLIPNCNKMDKASMLDDAIDYLKTLKLQLQIMTMGRGLCMPLNHLMMLPAHHMSMSMNMNAQHLMGFRPEVQFPIPQMSNGVTDHNNNNIRVQMFGFSNQLLPPPMSIHNAPFTLPIIGNSSTAANSFGDQNQPSKTCG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04717 345 Pfam Helix-loop-helix DNA-binding domain 185 231 IPR011598 GO:0046983
Vivi6g04717 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 242 IPR036638 GO:0046983
Vivi6g04717 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Vivi6g04717 345 MobiDBLite consensus disorder prediction 178 192 - -
Vivi6g04717 345 Gene3D - 178 239 IPR036638 GO:0046983
Vivi6g04717 345 MobiDBLite consensus disorder prediction 146 193 - -
Vivi6g04717 345 MobiDBLite consensus disorder prediction 90 133 - -
Vivi6g04717 345 MobiDBLite consensus disorder prediction 160 177 - -
Vivi6g04717 345 MobiDBLite consensus disorder prediction 97 121 - -
Vivi6g04717 345 CDD bHLH_AtPIF_like 182 244 IPR047265 -
Vivi6g04717 345 PANTHER TRANSCRIPTION FACTOR PIF3 78 333 IPR044273 GO:0003700|GO:0006355
Vivi6g04717 345 SMART finulus 188 237 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04717 Vivi-Chr6 150065112 150067155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04717 52 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.387 3.99e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g04717 HLH 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04717 K12126 - gmx:100804665 202.601