Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04716 ATGAGAAAATCCAACACTTCAAATTCCTCTTCTTCTATTAGCAGCAACACCAACAACCATCTTTTCATTTCAACTGCATCCTCTCTCAATACACATCAACAACAACTTCCCACAGATCTTAGCCTTGGACTCACCATTTCCAACACTCAACATTTTCATCTTGGTTCCTCTAATTCAAGGCAATGGCAACAAAACTATGATTACAATGATCATGGTAGCTTCTTTGTGAAAGTGTATATGGAAGGCATTCCAATTGGTAGAAAACTCAATATACTTGCTCATCAAAGTTACCATGAGTTAGTCAACACTCTTGAACACATGTTTGACACTACCATTCTATGGGGAAATGAGATGGATGAAGTGCAACCAGAAAGATGTCATGTGTTAACTTATGAAGATGAAGAAGGAGATTTGGTTATGGTTGGTGATGTTCCTTGGGAGATGTTTTTGTCCACTGTGAAGAGGTTGAAGATCACAAGAGTTAATACATATGGATGTTAG 501 0.3772 MRKSNTSNSSSSISSNTNNHLFISTASSLNTHQQQLPTDLSLGLTISNTQHFHLGSSNSRQWQQNYDYNDHGSFFVKVYMEGIPIGRKLNILAHQSYHELVNTLEHMFDTTILWGNEMDEVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVNTYGC 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04716 166 Gene3D - 67 165 - -
Vivi6g04716 166 ProSiteProfiles PB1 domain profile. 73 163 IPR000270 GO:0005515
Vivi6g04716 166 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 64 161 IPR003311 GO:0005634|GO:0006355
Vivi6g04716 166 Pfam AUX/IAA family 65 160 IPR033389 -
Vivi6g04716 166 SUPERFAMILY CAD & PB1 domains 64 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04716 Vivi-Chr6 150031691 150032736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04716 77 158 B3 DNA Binding Superfamily AT4G23980 35.366 5.32e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi6g04716 AUX_IAA 1.8e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04716 K14484 - gmx:100783140 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04716 6 150031691 150032736 Vivi1g05416 1 118516631 118517854 PCT