Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04705 ATGGAAAACGATCCATTCCTTCTAATCAACCCTCAAACCTCCTCCTTCACTTCCTCTAAATCCTTCAGCGACTTCACCACCTTACAACCACCACCACAACCACCACAACAACCACCATCAGAAATTCAATCCTGCAACTTCACTCCCCACCACCACCAACAACCATTCTCTCCTCCCAAACAAAAAAAACTCAGCCGCTGCAAAACCGCACCGGCCATGTTCATTCTCCCGAACCTAAAACCACCCACCACCAACCAACCTCATCTCCCCAAACCTCAAACCAACTCCATCATCCGACAAGGCGTTTGGCTTCTCCTTATCTACCTCTCCATCGGCGTAGCCATCTACTCTTTCAACACCAAAAACTTCTCCGGCATAGAAACTCACCCTATCGTCGACGCACTCTACTTCTGCATAGTCACCATGTGCACAATTGGTTACGGTGACATAGCTCCATTAACACCAACAACCAAAATCTTCGCATGCGTTTTCGTTCTAGTAGGTTTCGGTTTCGTAGACATACTTCTAAGTGGCCTTGTTAATTTCGTTTTAGATTTGCAAGAAAACACGATTTTAACCGGGCTTCAAATGGGTGCTAGGGAGGGTTTTTCAGCTAGGGATTACATTGTGGATGTTGCGAAAGGTAGGATGAGGATTAGGTTGAAGGTTGGTTTGGCACTTGGGGTTGTTGTTCTTTGTATTGGTGTTGGGAGTTTGGTTTTGTGTTTTGTGGAGGGTTTGGGTTGGGTTGATTCGGTTTATTTGGCGGTTATGTCTGTTACGACGGTTGGGTATGGGGATCGGGCGTTTAAGACGCTTACCGGGAGGTTGTTTGCGGCGATATGGTTGTTGTTTTCGACTTTGATGGTTGCTAGGGCTTTTCTGTATTTGGCTGAGGCTAGGATTGATAGGAGACATAGGAGATTGGCTAAGATGGTTTTGCATAGAGAGATTACTATTGAAGATTGGCTTGCTGCTGATATCAACAATACTGGTTTTATTAGTAAGTCAGAATATGTGATCTTCAAGCTGAAAGAGATGGGAAAAATACAAGATAAAGATGTAATGCAAATTTGTGATCAATTCAGGAAGCTGGATCCCTCTAACTGTGGGAAGATAACATTACCTCATCTCTTAGAGGGAAGAACATGA 1152 0.4436 MENDPFLLINPQTSSFTSSKSFSDFTTLQPPPQPPQQPPSEIQSCNFTPHHHQQPFSPPKQKKLSRCKTAPAMFILPNLKPPTTNQPHLPKPQTNSIIRQGVWLLLIYLSIGVAIYSFNTKNFSGIETHPIVDALYFCIVTMCTIGYGDIAPLTPTTKIFACVFVLVGFGFVDILLSGLVNFVLDLQENTILTGLQMGAREGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGVGSLVLCFVEGLGWVDSVYLAVMSVTTVGYGDRAFKTLTGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRLAKMVLHREITIEDWLAADINNTGFISKSEYVIFKLKEMGKIQDKDVMQICDQFRKLDPSNCGKITLPHLLEGRT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04705 383 ProSitePatterns EF-hand calcium-binding domain. 327 339 IPR018247 -
Vivi6g04705 383 MobiDBLite consensus disorder prediction 1 63 - -
Vivi6g04705 383 SUPERFAMILY Voltage-gated potassium channels 96 183 - -
Vivi6g04705 383 MobiDBLite consensus disorder prediction 1 27 - -
Vivi6g04705 383 Pfam Ion channel 104 183 IPR013099 -
Vivi6g04705 383 Pfam Ion channel 230 299 IPR013099 -
Vivi6g04705 383 Gene3D - 88 194 - -
Vivi6g04705 383 Gene3D - 207 325 - -
Vivi6g04705 383 SUPERFAMILY Voltage-gated potassium channels 213 321 - -
Vivi6g04705 383 SUPERFAMILY EF-hand 323 378 IPR011992 -
Vivi6g04705 383 PRINTS Two pore domain K+ channel signature 140 168 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vivi6g04705 383 PRINTS Two pore domain K+ channel signature 261 270 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vivi6g04705 383 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 131 357 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vivi6g04705 383 FunFam Two-pore potassium channel 3 206 320 - -
Vivi6g04705 383 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04705 Vivi-Chr6 149867868 149870513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04705 60 379 Ion Channels AT4G01840 68.902 2.35e-158 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04705 K05389 - gmx:100801488 556.984