Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04703 ATGACAGGAAAGGTAGCTATCTCAGTTGTTTCTCTTATCCTCGTTGTAGGTGTTGCCATCGGCGTTGTTGCCATTGTTTACAAATCTGGTGATCCTCAGATCAAAACTCAACAAAGATCTGTTCAAGTTGTTTGTCAAAATGCAGAAGACAAAAGTCTTTGCTATGACACTCTTAAATCCGTTAATGGCATCGACTCCGCGGATCCAAAGGCATACATAGCAGCGGCGGTGAAGGCCACCACGGACAGTGTCATCAAGGCTTTCAACATGAGTGACAGACTCTCCACCGAGTACGGTAGCAAAGATAATGGCGTCAAGATGGCTCTTGATGACTGCAAAGATTTGCTGGAGTTTGCCATGGACAGTCTTGAAATGTCCACCAATTTGATTCGTGACAACAACATTCAAGCTTTGCATTCGCAATCTCCTGATATCAGGAACTGGTTGAGTTCAGTTATCTCTTATCAACAAAGTTGCATGGAAGGATTTGATGATGCAAAAGACGGTGAGAAGAAGATCAAGGATCAGTTTCAAGTAGAGTCTTTGGATAGCGTACAAAAGATCACTGGTGTTGCACTTGATATCATGAGTGGTTTGTCCAACATCCTTGAACAATTCAACTTGAAGCTTGATCTTAAACCTGCTTTCCGTCGTCTTCTTGCTGAGGATATTGATGATGAAGGATTCCCTACATGGTTCTCAGCTTCTGACCGTAAGCTTTTGGCTTCCATGCAAGGAAAGGGATGGAGATCAAAGGTTAAGGCTAATGCTATTGTTGCCAAGGATGGTAGTGGTCAATTTAAAACCATTAAGGATGCTATTGCTTCTTACCCTAAGGGAAACAAAGGAAGATATGTTATCTACGTTAAGGCCGGTGTTTATGACGAGTACATCACCGTCCCCAAGGATGCCGCTAACATTCTTATGTATGGTGATGGCCCTCAAAGAACCATTGTCACCGGTAGCAAGTGCTATGCTAAGGGTGTCAAGACCATGCAAACCGCCACTTTCGCCAACACCGCACCTGGATTCATCGGAAAGGCAATGACATTCGAGAACACAGCTGGTCCTGATGGTCACCAAGCCGTTGCTTTGAGAAATCAAGGAGATATGTCTGCTTTCATCGGTTGCCATATCCTTGGTTACCAAGACACATTGTACGTTCAAACCAACAGACAATTCTACCGCAACTGTGTCATCTCAGGAACCATCGATTTCATCTTCGGAACATCACCTACCTTGATTCAACACTCCGTGATCATCGCCAGGAAGCCTAACATGAACCAATTCAACACCGTTACTGCTGACGGAACAGCCGAGAAAAACATGGTTACAGGTATTGTGATCCAAGATTGCCAGATCGTTCCAGAAGCACAATTGTTTCCAATTAGATTCCAAATCAAATCTTACTTGGGAAGACCATGGAAGGCATACTCAAGGACAGTTGTGATGGAATCCACCATCGGTGACTTCCTTCATCCAGATGGTTGGGTCGCATGGGCAGGTGAGCACTTTGAAAACACATGTTACTATGCTGAACATGCCAACACTGGACCTGGTGCCGATGTTAGCAAGAGGATCAAGTGGAAGGGTTATCATGGTGTTATTAGCAGGGCTGAAGCTACCAAATTCACTGCTGGTGAGTTTCTTAAGGCTGGACCTAACTCTGGATCTGAATGGTTGAAGGCACTTCGTGTTCCTCACTATCTTGGCTTCAAAGCTTGA 1725 0.4452 MTGKVAISVVSLILVVGVAIGVVAIVYKSGDPQIKTQQRSVQVVCQNAEDKSLCYDTLKSVNGIDSADPKAYIAAAVKATTDSVIKAFNMSDRLSTEYGSKDNGVKMALDDCKDLLEFAMDSLEMSTNLIRDNNIQALHSQSPDIRNWLSSVISYQQSCMEGFDDAKDGEKKIKDQFQVESLDSVQKITGVALDIMSGLSNILEQFNLKLDLKPAFRRLLAEDIDDEGFPTWFSASDRKLLASMQGKGWRSKVKANAIVAKDGSGQFKTIKDAIASYPKGNKGRYVIYVKAGVYDEYITVPKDAANILMYGDGPQRTIVTGSKCYAKGVKTMQTATFANTAPGFIGKAMTFENTAGPDGHQAVALRNQGDMSAFIGCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQHSVIIARKPNMNQFNTVTADGTAEKNMVTGIVIQDCQIVPEAQLFPIRFQIKSYLGRPWKAYSRTVVMESTIGDFLHPDGWVAWAGEHFENTCYYAEHANTGPGADVSKRIKWKGYHGVISRAEATKFTAGEFLKAGPNSGSEWLKALRVPHYLGFKA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04703 574 SMART PMEI_2 36 195 IPR006501 GO:0004857
Vivi6g04703 574 SUPERFAMILY Pectin lyase-like 253 568 IPR011050 -
Vivi6g04703 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 199 IPR035513 -
Vivi6g04703 574 PANTHER PECTINESTERASE 16 562 - -
Vivi6g04703 574 FunFam Pectinesterase 37 200 - -
Vivi6g04703 574 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Vivi6g04703 574 Pfam Plant invertase/pectin methylesterase inhibitor 40 195 IPR006501 GO:0004857
Vivi6g04703 574 FunFam Pectinesterase 250 572 - -
Vivi6g04703 574 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Vivi6g04703 574 Pfam Pectinesterase 256 551 IPR000070 GO:0030599|GO:0042545
Vivi6g04703 574 CDD PMEI-like_3 44 201 - -
Vivi6g04703 574 Gene3D - 250 572 IPR012334 -
Vivi6g04703 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 200 IPR035513 -
Vivi6g04703 574 NCBIfam pectinesterase inhibitor domain 11 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04703 Vivi-Chr6 149822672 149824776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04703 1 572 Carbohydrate Esterase AT2G47030 39.868 4.81e-145 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04703 K01051 - gmx:100781507 857.44