Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04702 ATGAACGGAAAGGTAATTATCTCAGTTGTTTCTCTTATCCTCGTCGTTGGTGTTGCCATCGGCGTTGTTGTCGCTGTTCACAAGAAAGGTGAAGATCCTGAGATCCAAATTCAACAAAGATCTGTTCAAATTGTTTGTCAAAATGCAGAAGATCAAAAGCTTTGCCATGACACTCTTAAATCCGTTAATGGCCCCGCCTGCGGGGATCCAAAGGCATACATAGCAGCGGTCGTGAAAGCCACCACGGACAGTGTCATTAAGGCTTTCAACATGAGTGACAGACTCTCCACCGAGTACGGTAGCAAAGATAATGGCGTCAAGATGGCTCTTGATGACTGCAAAGATTTGCTGGAGTTTGCCATGGACAGTCTTGAAATGTCCACCAATTTGGTTCGTGACAACAACATTCAAGGTGTGCATTCCCAAACTCCTGATCTCAGGAACTGGTTGAGTGCAGTTATCTCTTATAAACAAAGTTGCATGGAAGGATTTGACGATACAAAAGATGGTGAGAAGAAGATCAAGGATCAGTTTCAAGTACAATCATTGGACAACCTACAAAAGATCACTGGTGTTGCACTTGATATCGTGAGTGGTTTGTCCAACATCCTTCAACAATTCAACTTGAAGCTTGATCTTAAACCTGCTTCTCGTCGTCTTCTTGCTGATGATATTGATGATGAAGGATTCCCTTCATGGTTCTCTGGTTCTGATCGTAAGCTTTTGGCTTCCATGCAAGGAAAGGGATGGAGAACTCGTGTTAAGGCTAATGTTATTGTTGCCAAGGATGGAAGTGGTCAATTTAAAACCATTAAGGATGCTATTGCTTCTTACCCTAAGGGAAACAAAGGAAGATATGTTATCTACGTTAAGGCCGGTGTTTATGACGAGTACATCACCGTCCCCAAGGATGCCGTTAACATTCTTATGTATGGTGATGGCCCTCAAAAAACCATTGTCACCGGTAAAAAGTCGTATACTTCTGGTTACAAGACCATGCACTCCGCCACCTTCGCCAACACCGCACCTGGATTCATCGGAAAGGCAATGACATTCGAGAACACAGCCGGTCCTGATGGTCACCAAGCCGTTGCTTTTAGAAACCAAGGAGATGCGACTGCTATGGTTGGTTGCCATTTCGTTGGTTATCAAGATACATTGTACGTTCAATCCAACAGACAATTCTACCGCAACTGTGTTATCTCAGGAACCATCGATTTCATCTTCGGAGCATCACCTGCCTTGATTCAACACTCCGTGATCATCGTGAGGAAGCCTAACATGAAACAATTCAACACAGTTACCGCTGACGGAACAGAGCAGCAGAGCATGAATACAGGTATTGTGATCCAAGATTGCCAGATCGTTCCAGAAAATCAACTTTATCCAGTGAGATTCCAAATCAAATCTTACTTGGGAAGACCATGGAAGTATCTTGCAAGGACAGTTGTGATGGAATCCACCATTGGTGACTTCATTCATCCAGATGGTTGGGTCCCATGGGACAATAAGCAGGACTTTGAAAACACATTGTACTATGCTGAATATGCCAACACTGGACCTGGTGCCGATGTTAGCAAGAGGATCAAGTGGAAGGGTTATCATGGTGTTATTAGCAAGGCTGAAGCCACCAAATTCACTGCGGTTGAGTTTATGAAAGCCGGACCTAACTCTTCAGCTGCATGGTTGAAGGCTTCTCATGTTCCTCACTATCTTGGCTTCAAAGCTTGA 1731 0.4402 MNGKVIISVVSLILVVGVAIGVVVAVHKKGEDPEIQIQQRSVQIVCQNAEDQKLCHDTLKSVNGPACGDPKAYIAAVVKATTDSVIKAFNMSDRLSTEYGSKDNGVKMALDDCKDLLEFAMDSLEMSTNLVRDNNIQGVHSQTPDLRNWLSAVISYKQSCMEGFDDTKDGEKKIKDQFQVQSLDNLQKITGVALDIVSGLSNILQQFNLKLDLKPASRRLLADDIDDEGFPSWFSGSDRKLLASMQGKGWRTRVKANVIVAKDGSGQFKTIKDAIASYPKGNKGRYVIYVKAGVYDEYITVPKDAVNILMYGDGPQKTIVTGKKSYTSGYKTMHSATFANTAPGFIGKAMTFENTAGPDGHQAVAFRNQGDATAMVGCHFVGYQDTLYVQSNRQFYRNCVISGTIDFIFGASPALIQHSVIIVRKPNMKQFNTVTADGTEQQSMNTGIVIQDCQIVPENQLYPVRFQIKSYLGRPWKYLARTVVMESTIGDFIHPDGWVPWDNKQDFENTLYYAEYANTGPGADVSKRIKWKGYHGVISKAEATKFTAVEFMKAGPNSSAAWLKASHVPHYLGFKA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04702 576 SMART PMEI_2 37 196 IPR006501 GO:0004857
Vivi6g04702 576 SUPERFAMILY Pectin lyase-like 253 553 IPR011050 -
Vivi6g04702 576 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Vivi6g04702 576 FunFam Pectinesterase 38 201 - -
Vivi6g04702 576 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Vivi6g04702 576 FunFam Pectinesterase 251 574 - -
Vivi6g04702 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 201 IPR035513 -
Vivi6g04702 576 Gene3D - 251 574 IPR012334 -
Vivi6g04702 576 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Vivi6g04702 576 Pfam Pectinesterase 257 553 IPR000070 GO:0030599|GO:0042545
Vivi6g04702 576 NCBIfam pectinesterase inhibitor domain 10 198 IPR006501 GO:0004857
Vivi6g04702 576 CDD PMEI-like_3 45 202 - -
Vivi6g04702 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Vivi6g04702 576 PANTHER PECTINESTERASE 14 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04702 Vivi-Chr6 149812866 149814895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04702 1 574 Carbohydrate Esterase AT2G47030 39.739 1.19e-139 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04702 K01051 - gmx:100781507 826.239