Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04697 ATGGAAGCTTTTCAATTGTACGGTAATGGTAGTGGTAGTGGGTTATCTGATTTGAGGGCTATGGGGAAGAAACCAGAGTGGGATATGAATAATTGGAAATGGGATGGTGATCTTTTTATAGCTAGTAGGTTGAGTCCTGTCCCGGAGCAGAGACAGTTTTTGCCTCTTCCTGTTGTTGTTGGTGGTGGTTCTGGTGGTGGTGGTGGTGGTGGTTGCTCTAATTCAAATAGTTCATCTTCTTGTTCTGAACAGTTAGATCTTGGGGTTTCTCAAGGGAACAAAGAAGGGGAGAGGAAGAGGAGGGTTATTGTAGTGGAGGATGAATTGAGTTTGAATAAGGAAGGTGGTGGTCTTAGCTTAAACCTTGGTGGTGGTGGTGGTGGTGGTAGTCATGGTCAAGTTGCTATATGGGAAGGGAACACTGGGAAGAAAAGTAGAGTAGCTGGTGGAGGTAGCTCCAGTAGGGCATTTTGTCAGGTGGAGGATTGTCGTGCGGATCTCAACAATGCTAAAGATTATCACCGACGTCATAAAGTTTGTGAGGTGCACTCGAAGGCCAGTAAGGCTCTTGTTGGAAACACGATGCAGCGGTTCTGTCAACAATGTAGTAGATTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGGCGTCTGGCAGGCCATAATAAAAGGAGGAGGAAAACAAATCAGGAGGCTGTTCCTAATGGAAGCACACCGAACGATGATCAGACCAGTAGTTATCTGTTGATAAGTTTGTTGAAGATACTTTCAAATATGCAGCCTGACAGGTCAAATCAAGCCACTGATCAGGATCTGCTTACTCATCTTTTAAGGAGTCTTGCTAATCAGAATGGCGAACAAGGGGGAAGGAACTTGTCTAACCTTTTACGGGAACCTGAAAATCAGTTGAAAGAAGGGTCTTTATTTGGGAAGTCGGAGGTGGTTTCTACTTTATTTACTGATGGTTCCCAAGGTTCTCCAACTGTCACAAGACAGAATCAAACAGTTTCTATTAGTGAAATTCAGCATCAAGTGATGCAAGCACATGATGTTACGGTTTTTGATCAACAAACCACATCTTCTGCAAAGCCCGGTGCTTCAAATAGCCCTCCAGCTTACTCAGAAGCCAGAGACAGTACTGCTGGGCAGCCCAAGATGAATGATTTTGATCTGAATGACATCTATATTGACTCAGACGATGGCATAGAGGACATAGAAAGGTTGCCTGTCACGGCAAATATTGTTACTAGCTCTCTTGATTACCCATGGATGCAACAGGATTCGCATCAGTCAAGTCCACCTCAAAGTGGAAACTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCCACTGGTGAAGTTCAGAATCGCACGGATCGAATTGTTTTTAAACTCTTTGGTAAAGAACCAAGTGATTTTCCTATTGTACTCAGAGCACAGATTCTTGACTGGTTATCGCACAGTCCCACTGATATTGAAGGCTATATACGGCCTGGTTGTATCGTTTTGACTATTTATCTGCGTCAGACTGAGGCTGTGTGGGAGGAGCTTTGCTTTGATCTGACTTCCAGTTTAAATAGGCTTCAGGATGTCTCAGATGATGATTTTTGGAGAACTGGGTGGATTCATATCAGGGTGCAGAATCAGATGGCCTTCATTTTCAATGGCCAGGTTGTCATTGATACATCCCTACCTTTCAAGAGTAACAATTATGGTAAGATTTTGAGTGTTAGTCCAATTGCTGTACCAGCATCAAAAACAGCTCAATTTTCTGTGAAGGGTCTCAACCTGACTCGCTCTGCCACTAGGTTATTGTGTGCTTTAGAAGGGAATTATTTGGTCTGTGAAGATACTCACGAGTCTATGGATCAATGCTCCAAGGATCTTGATGAGCTTCAGTGCGTCCAATTTTCATGTTCTGTCCCTGCAATGAACGGACGGGGATTTATTGAGATTGAGGACCAGGGTTTGAGCAGCAGTTTTTTCCCTTTCATAGTTGTGGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAACCTTTACTGGAAAGTGATGCTTATCCAGATGCTGAAGGGGCAGGGAAAATTCAAGCAAAAAATCAAGCCATGGATTTCATTCATGAAATGGGCTGGCTTCTCCACAGAAGCCAAATAAAATCTAGGACGGTTCACTTGAAGTCTAGTGCAGATCTGTTTCCATTAGATCGATTCAAGTGGCTCGTGGAGTTCTCTGTAGACCACGATTGGTGTGCAGTAGTTAAAAAACTATTAAACCTCCTCCTTGATGGAACAGTGAGTACAGGAAACCACACATCCTTGTATCTTGCACTCTCAGAGTTGGGTCTCCTTCACAGATCTGTGAGGAGAAATAGCAGGCAGTTGGTGGAGCTTCTTTTGAGATTTGTTCCTCAAAATATTTCAGATAAAATAGGACCTGAACATAACGCGCTGGTTAATGGAGAGAATCAAAACTTCTTGTTTAGACCTGATGTTGTCGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCCGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTGACTAATGATCCCTGCATGGTTGGAATTGAAGCATGGAAGAATGCACGCGACAGCACAGGGTCAACACCTGAGGATTATGCACGTTTACGTGGTCATTACACATACATTCACTTGGTGCAAAAGAAAATCAACAAGAGACAAGGAGGGGCTCATGTCGTGGTTGATATTCCTAGCAATTCAACAAGGCTCAATACAAGCCAGAAGAAAGATGAGTCGTCCACTACCTTTGAGATTGGACATGCTGAGGTTAAAACTATCCTAAAGCACTGCAAACTCTGTGATCGTAAGTTGTCATGTAGAACTGCTGTAGGGAAGTCTTTCGTATACAGACCTGCAATGCTGTCAATGGTTGCCGTAGCAGCAGTCTGTGTATGCGTGGCTCTTCTCTTCAAAAGCTCGCCCGAAGTTCTGTATATATTCCGACCATTCAGGTGGGAATCGTTGGAGTTTGGAACAAGCTGA 3042 0.4389 MEAFQLYGNGSGSGLSDLRAMGKKPEWDMNNWKWDGDLFIASRLSPVPEQRQFLPLPVVVGGGSGGGGGGGCSNSNSSSSCSEQLDLGVSQGNKEGERKRRVIVVEDELSLNKEGGGLSLNLGGGGGGGSHGQVAIWEGNTGKKSRVAGGGSSSRAFCQVEDCRADLNNAKDYHRRHKVCEVHSKASKALVGNTMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQEAVPNGSTPNDDQTSSYLLISLLKILSNMQPDRSNQATDQDLLTHLLRSLANQNGEQGGRNLSNLLREPENQLKEGSLFGKSEVVSTLFTDGSQGSPTVTRQNQTVSISEIQHQVMQAHDVTVFDQQTTSSAKPGASNSPPAYSEARDSTAGQPKMNDFDLNDIYIDSDDGIEDIERLPVTANIVTSSLDYPWMQQDSHQSSPPQSGNSDSASAQSPSSSTGEVQNRTDRIVFKLFGKEPSDFPIVLRAQILDWLSHSPTDIEGYIRPGCIVLTIYLRQTEAVWEELCFDLTSSLNRLQDVSDDDFWRTGWIHIRVQNQMAFIFNGQVVIDTSLPFKSNNYGKILSVSPIAVPASKTAQFSVKGLNLTRSATRLLCALEGNYLVCEDTHESMDQCSKDLDELQCVQFSCSVPAMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLESDAYPDAEGAGKIQAKNQAMDFIHEMGWLLHRSQIKSRTVHLKSSADLFPLDRFKWLVEFSVDHDWCAVVKKLLNLLLDGTVSTGNHTSLYLALSELGLLHRSVRRNSRQLVELLLRFVPQNISDKIGPEHNALVNGENQNFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGGAHVVVDIPSNSTRLNTSQKKDESSTTFEIGHAEVKTILKHCKLCDRKLSCRTAVGKSFVYRPAMLSMVAVAAVCVCVALLFKSSPEVLYIFRPFRWESLEFGTS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04697 1013 MobiDBLite consensus disorder prediction 222 248 - -
Vivi6g04697 1013 SUPERFAMILY Ankyrin repeat 763 897 IPR036770 -
Vivi6g04697 1013 MobiDBLite consensus disorder prediction 66 97 - -
Vivi6g04697 1013 SUPERFAMILY SBT domain 156 236 IPR036893 GO:0003677|GO:0005634
Vivi6g04697 1013 Gene3D - 149 219 IPR036893 GO:0003677|GO:0005634
Vivi6g04697 1013 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Vivi6g04697 1013 Pfam SBP domain 158 231 IPR004333 GO:0003677
Vivi6g04697 1013 FunFam Squamosa promoter-binding-like protein 14 149 219 - -
Vivi6g04697 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 899 IPR044817 GO:0003677
Vivi6g04697 1013 MobiDBLite consensus disorder prediction 69 89 - -
Vivi6g04697 1013 Gene3D - 744 941 IPR036770 -
Vivi6g04697 1013 MobiDBLite consensus disorder prediction 360 380 - -
Vivi6g04697 1013 MobiDBLite consensus disorder prediction 360 390 - -
Vivi6g04697 1013 MobiDBLite consensus disorder prediction 428 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04697 Vivi-Chr6 149732375 149740004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04697 1 1013 SBP-box Gene Family AT3G60030 52.237 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi6g04697 SBP 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04697 - - gmx:100809806 1502.65