Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04683 ATGATGGCTTCAGGTGGTGTTGCACCTGTTTCTGGATTTATAGATAAGAATGCAAGTTCTGTTGGTGTTGAAAAGTTGCCTCAGGAGATGAATGACATGAAAATTAGAGATGATAAGGAAATGGAAGCTGCTACTGTGGTTGTGGATGGAAATGGGACTGAAACTGGACATATCATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACGATAAGTTACATGGCCGAGCGCGTTGTTGGACATGGATCTTTCGGTGTAGTCTTTCAGGCGAAGTGTTTGGAGACGGGAGAAACTGTGGCTATAAAGAAGGTTCTTCAGGACAAGAGGTACAAGAATCGGGAATTGCAAACCATGCGCCTTTTGGATCACCCGAATGTTGTATCTTTGAAGCATTGTTTCTTCTCGACGACTGAAAAGGATGAGCTTTATCTTAACTTGGTGCTTGAGTATGTTCCGGAGACTGTTAGTCGCGTGATCAGACACTACAATAAAATGAATCAAAGAATGCCTATGATATATGTCAAACTTTATTCTTACCAGATTTGCAGAGCACTTGCTTATATTCACAATAGTATTGGAGTTTGTCACAGAGATATTAAACCTCAAAATTTACTGGTCAATCCTCACACTCACCAGCTGAAGATATGCGATTTCGGAAGTGCTAAAGTCTTGGTTAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAACTTATATTTGGCGCAACCGAGTACACCACAGCCATTGATATTTGGTCAGCCGGTTGCGTACTTGGTGAACTTTTGCTTGGTCAGCCGCTTTTTCCTGGTGAGAGTGGTGTAGACCAACTCGTGGAAATTATCAAGGTTTTAGGTACTCCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTATACAGAGTTTAAATTTCCTCAAATCAAAGCTCATCCATGGCACAAGATCTTTCACAAGCGAATGCCACCGGAAGCCGTGGATCTTGTCTCAAGACTATTGCAATACTCTCCAAATCTTCGAAGCACGGCTTTGGAGGCACTGGTTCATCCATTCTTTGACGAGCTGCGCGATCCAAACACTCGGTTACCGAACGGACGTTTCCTTCCTCCGTTATTCAACTTCAAAGTCACTGAGCTCAAGGGAGTTCCGGCCGAGATGCTGGTGAAGCTGGTTCCCCCTCATGCAAGAAAGCAATGTGCCTTGTTTGGATCATCATCATGA 1245 0.4313 MMASGGVAPVSGFIDKNASSVGVEKLPQEMNDMKIRDDKEMEAATVVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVSRVIRHYNKMNQRMPMIYVKLYSYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKVTELKGVPAEMLVKLVPPHARKQCALFGSSS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04683 414 Pfam Protein kinase domain 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04683 414 ProSiteProfiles Protein kinase domain profile. 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04683 414 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 40 406 - -
Vivi6g04683 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vivi6g04683 414 CDD STKc_GSK3 71 363 IPR039192 -
Vivi6g04683 414 SUPERFAMILY Protein kinase-like (PK-like) 75 388 IPR011009 -
Vivi6g04683 414 FunFam Glycogen synthase kinase-3 beta 60 155 - -
Vivi6g04683 414 Gene3D Phosphorylase Kinase; domain 1 60 155 - -
Vivi6g04683 414 SMART serkin_6 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04683 414 Gene3D Transferase(Phosphotransferase) domain 1 156 404 - -
Vivi6g04683 414 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
Vivi6g04683 414 FunFam Shaggy-related protein kinase kappa 156 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04683 Vivi-Chr6 149491993 149495079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04683 82 363 Core Cell Cycle Gene Families AT1G76540 35.172 4.72e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vivi6g04683 Pkinase 2.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04683 K27413 - gmx:100788046 773.081