Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04660 ATGCTGGAGATTCAGAACGAACCACCACCGGAGCAAACCATGAATTTCATTGGAGATTCAACTAACTCTCAATTTCACCATAACACTTTCCCCAATCACGCTACCGCTCCGAATCCGAATCCTAACTTCTCCATTCCTCGTCCTCCTCCTCCTCGCAAACGACCTTGGGGAGCTTCTCAAGATCATGTTGATATTCATGGTCATGTTAAACTTTACGTTACACCAGTTCCTAGAACGTTATCTGAGGATGATATCCGACTTGTGTTCGAAGTATATGGAACTATTGTTGAGGTTGTTCTTTTATGGGATAAGGCAACTGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACAATTAATGAAGCTGAAATGGCTATTAAGGGTTTAAGCAATCAGTATACATTTCCTGGAGAAGCACTTCCTGTTGTTGTCAGATTTGCTGATCGTAAACGTGAACGTTTTGCGGTGGATAAAATTTATGTTGGTAACATAAACAAAGAGGCTTCAACACAGGACATTGAAGAAATATTTTCCCCCTACGGGCATATAGAAGATGTCTATGTCGTGCGGAATCGTGGATATGGTTTTGTCACATTTTCTAATAGAGAGACGGCGTTGGCAGCAATCAAAGGGTTAAATAGAACATTCACAATGAGAGGTTGTGATCAACCGTTAAATGTTCGTTTTGCGGATCCTAAGAAACCTAAGATGGGAGAATCAAGGGGCAACTACTTACCTGCGAATGCAAATTACGGTCCCATTTCTCAAGAACCAGCAGTTTGGCCACTACCAAATTTTTGTGATTCTAATACTGGAGGGACTGTTGCGCATATTGCTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGCTCATATGCCTAACTGGGAACCTGGGGCTACTGTTGTACAGCAACCATTTCTTCCCCAACATGTAAATTCACAATTGGCTTCAATGCCTTTGCGGCCAATTCATCCTCCCAACCTGCCTTCTCAACCATTTATTACCAAGGTGCAGAGACAATTTCATCCAGCAGATTTGCCGGTCCAAAATATAAAGCAGCAGCTAAGTTCTCAGCTGCCTACTCAGACTGAGCATAACAATTTAGTTGCTGTCAGTACCTCGCCTGATCTGTTAACTAATCCCAAAGATGAAGAGTTTCCAGAGTGTGACTGGAGTGAACATTACTGCCCAGATGGTAACAAGTACTACTACAATTGTGTCACTTACGAAAGCCGATGGGATAAGCCAGAGGAATATGACAAGGAATCACTGAAACAACACAAGCAAGATGATCACAGCACTCCTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGGACACAGCATTCCTTGCCTGCAGGAATCACAGAAGCAACACAAGCAAGATAATCACATCATTCCTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAGCATTCCATGCCCGCAGGAATCACAGAAACAACACAAGCAAGATGATCACAGCATTCCTTGCCTGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAGCATTACTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAACATTCCTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAGCATTCCATGCCCGCAGGAACCACAGAAGCGACACAACCAAGATGATCACAGCATTCCTTGCTCGCAGTTGTCGTTATCTTCCTCTCAAGAAGTTTCTCAAAGGCAACAGGAAACAAATAACGACCACATGCAGTCAGAAACAAGTCCTGTTGTTGAACAGGTGTGA 1830 0.4383 MLEIQNEPPPEQTMNFIGDSTNSQFHHNTFPNHATAPNPNPNFSIPRPPPPRKRPWGASQDHVDIHGHVKLYVTPVPRTLSEDDIRLVFEVYGTIVEVVLLWDKATGARQGSCLVKYSTINEAEMAIKGLSNQYTFPGEALPVVVRFADRKRERFAVDKIYVGNINKEASTQDIEEIFSPYGHIEDVYVVRNRGYGFVTFSNRETALAAIKGLNRTFTMRGCDQPLNVRFADPKKPKMGESRGNYLPANANYGPISQEPAVWPLPNFCDSNTGGTVAHIAPHHSRLPHQQVNAHMPNWEPGATVVQQPFLPQHVNSQLASMPLRPIHPPNLPSQPFITKVQRQFHPADLPVQNIKQQLSSQLPTQTEHNNLVAVSTSPDLLTNPKDEEFPECDWSEHYCPDGNKYYYNCVTYESRWDKPEEYDKESLKQHKQDDHSTPCPQESQKQHKQDGHSIPCLQESQKQHKQDNHIIPCPQESQKQHKQDDHSIPCPQESQKQHKQDDHSIPCLQESQKQHKQDDHSITCPQESQKQHKQDDHNIPCPQESQKQHKQDDHSIPCPQEPQKRHNQDDHSIPCSQLSLSSSQEVSQRQQETNNDHMQSETSPVVEQV 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04660 609 CDD WW 392 421 IPR001202 GO:0005515
Vivi6g04660 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 218 IPR000504 GO:0003723
Vivi6g04660 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Vivi6g04660 609 MobiDBLite consensus disorder prediction 41 55 - -
Vivi6g04660 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 233 IPR000504 GO:0003723
Vivi6g04660 609 MobiDBLite consensus disorder prediction 1 59 - -
Vivi6g04660 609 SMART ww_5 389 421 IPR001202 GO:0005515
Vivi6g04660 609 SMART rrm1_1 70 146 IPR000504 GO:0003723
Vivi6g04660 609 SMART rrm1_1 159 229 IPR000504 GO:0003723
Vivi6g04660 609 MobiDBLite consensus disorder prediction 8 40 - -
Vivi6g04660 609 Gene3D - 390 433 - -
Vivi6g04660 609 MobiDBLite consensus disorder prediction 475 609 - -
Vivi6g04660 609 SUPERFAMILY RNA-binding domain, RBD 38 154 IPR035979 GO:0003676
Vivi6g04660 609 MobiDBLite consensus disorder prediction 478 571 - -
Vivi6g04660 609 MobiDBLite consensus disorder prediction 421 452 - -
Vivi6g04660 609 MobiDBLite consensus disorder prediction 572 609 - -
Vivi6g04660 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 150 IPR000504 GO:0003723
Vivi6g04660 609 ProSitePatterns WW/rsp5/WWP domain signature. 394 419 IPR001202 GO:0005515
Vivi6g04660 609 SUPERFAMILY WW domain 393 422 IPR036020 GO:0005515
Vivi6g04660 609 Gene3D - 60 155 IPR012677 -
Vivi6g04660 609 Gene3D - 156 240 IPR012677 -
Vivi6g04660 609 PANTHER RNA BINDING PROTEIN 29 496 - -
Vivi6g04660 609 ProSiteProfiles WW/rsp5/WWP domain profile. 394 421 IPR001202 GO:0005515
Vivi6g04660 609 SUPERFAMILY RNA-binding domain, RBD 159 244 IPR035979 GO:0003676
Vivi6g04660 609 MobiDBLite consensus disorder prediction 421 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04660 Vivi-Chr6 149253912 149261070 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04660 71 347 Eukaryotic Initiation Factors Gene Family AT1G71770 25.333 2.28e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04660 K13207 - gmx:100776162 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04660 6 149253912 149261070 Vivi6g04660 6 149253912 149261070 ECH