Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04659 ATGCTGGAGATTCAGAACGAACCACCACCGGAGCAAACCATGAATTTCATTGGAGATTCAACTAACTCTCAATTTCACCATAACACTTTCCCCAATCACGCTACCGCTCCGAATCCGAATCCTAACTTCTCCATTCCTCGTCCTCCTCCTCCTCGCAAACGACCTTGGGGAGCTTCTCAAGATCATGTTGATATTCATGGTCATGTTAAACTTTACGTTACACCAGTTCCTAGAACGTTATCTGAGGATGATATCCGACTTGTGTTCGAAGTATATGGAACTATTGTTGAGGTTGTTCTTTTATGGGATAAGGCAACTGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACAATTAATGAAGCTGAAATGGCTATTAAGGGTTTAAGCAATCAGTATACATTTCCTGGAGAAGCACTTCCTGTTGTTGTCAGATTTGCTGATCGTAAACGTGAACGTTTTGCGGTGGATAAAATTTATGTTGGTAACATAAACAAAGAGGCTTCAACACAGGACATTGAAGAAATATTTTCCCCCTACGGGCATATAGAAGATGTCTATGTCGTGCGGAATCGTGGATATGGTTTTGTCACATTTTCTAATAGAGAGACGGCGTTGGCAGCAATCAAAGGGTTAAATAGAACATTCACAATGAGAGGTTGTGATCAACCGTTAAATGTTCGTTTTGCGGATCCTAAGAAACCTAAGATGGGAGAATCAAGGCCACTACCAAATTTTTGTGATTCTAATACTGGAGGGACTGTTGCGCATATTGCTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGCTCATATGCCTAACTGGGAACCTGGGGCTACTGTTGTACAGCAACCATTTCTTCCCCAACATGTAAATTCACAATTGGCTTCAATGCCTTTGCGGCCAATTCATCCTCCCAACCTGCCTTCTCAACCATTTATTACCAAGGTGCAGAGACAATTTCATCCAGCAGATTTGCCGGTCCAAAATATAAAGCAGCAGCTAAGTTCTCAGCTGCCTACTCAGACTGAGCATAACAATTTAGTTGCTGTCAGTACCTCGCCTGATCTGTTAACTAATCCCAAAGATGAAGAGTTTCCAGAGTGTGACTGGAGTGAACATTACTGCCCAGATGGTAACAAGTACTACTACAATTGTGTCACTTACGAAAGCCGATGGGATAAGCCAGAGGAATATGACAAGGAATCACTGAAACAACACAAGCAAGATGATCACAGCACTCCTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGGACACAGCATTCCTTGCCTGCAGGAATCACAGAAGCAACACAAGCAAGATAATCACATCATTCCTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAGCATTCCATGCCCGCAGGAATCACAGAAACAACACAAGCAAGATGATCACAGCATTCCTTGCCTGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAGCATTACTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAACATTCCTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAGCATTCCATGCCCGCAGGAACCACAGAAGCGACACAACCAAGATGATCACAGCATTCCTTGCTCGCAGTTGTCGTTATCTTCCTCTCAAGAAGTTTCTCAAAGGCAACAGGAAACAAATAACGACCACATGCAGTCAGAAACAAGTCCTGTTGTTGAACAGGTGTGA 1770 0.4373 MLEIQNEPPPEQTMNFIGDSTNSQFHHNTFPNHATAPNPNPNFSIPRPPPPRKRPWGASQDHVDIHGHVKLYVTPVPRTLSEDDIRLVFEVYGTIVEVVLLWDKATGARQGSCLVKYSTINEAEMAIKGLSNQYTFPGEALPVVVRFADRKRERFAVDKIYVGNINKEASTQDIEEIFSPYGHIEDVYVVRNRGYGFVTFSNRETALAAIKGLNRTFTMRGCDQPLNVRFADPKKPKMGESRPLPNFCDSNTGGTVAHIAPHHSRLPHQQVNAHMPNWEPGATVVQQPFLPQHVNSQLASMPLRPIHPPNLPSQPFITKVQRQFHPADLPVQNIKQQLSSQLPTQTEHNNLVAVSTSPDLLTNPKDEEFPECDWSEHYCPDGNKYYYNCVTYESRWDKPEEYDKESLKQHKQDDHSTPCPQESQKQHKQDGHSIPCLQESQKQHKQDNHIIPCPQESQKQHKQDDHSIPCPQESQKQHKQDDHSIPCLQESQKQHKQDDHSITCPQESQKQHKQDDHNIPCPQESQKQHKQDDHSIPCPQEPQKRHNQDDHSIPCSQLSLSSSQEVSQRQQETNNDHMQSETSPVVEQV 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04659 589 CDD WW 372 401 IPR001202 GO:0005515
Vivi6g04659 589 MobiDBLite consensus disorder prediction 41 55 - -
Vivi6g04659 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 233 IPR000504 GO:0003723
Vivi6g04659 589 MobiDBLite consensus disorder prediction 1 59 - -
Vivi6g04659 589 SUPERFAMILY RNA-binding domain, RBD 159 251 IPR035979 GO:0003676
Vivi6g04659 589 SMART rrm1_1 70 146 IPR000504 GO:0003723
Vivi6g04659 589 SMART rrm1_1 159 229 IPR000504 GO:0003723
Vivi6g04659 589 MobiDBLite consensus disorder prediction 8 40 - -
Vivi6g04659 589 Gene3D - 156 240 IPR012677 -
Vivi6g04659 589 Gene3D - 60 155 IPR012677 -
Vivi6g04659 589 SUPERFAMILY RNA-binding domain, RBD 38 154 IPR035979 GO:0003676
Vivi6g04659 589 MobiDBLite consensus disorder prediction 455 589 - -
Vivi6g04659 589 MobiDBLite consensus disorder prediction 401 432 - -
Vivi6g04659 589 ProSiteProfiles WW/rsp5/WWP domain profile. 374 401 IPR001202 GO:0005515
Vivi6g04659 589 MobiDBLite consensus disorder prediction 458 551 - -
Vivi6g04659 589 SUPERFAMILY WW domain 373 402 IPR036020 GO:0005515
Vivi6g04659 589 ProSitePatterns WW/rsp5/WWP domain signature. 374 399 IPR001202 GO:0005515
Vivi6g04659 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 218 IPR000504 GO:0003723
Vivi6g04659 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Vivi6g04659 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 150 IPR000504 GO:0003723
Vivi6g04659 589 MobiDBLite consensus disorder prediction 552 589 - -
Vivi6g04659 589 Gene3D - 370 413 - -
Vivi6g04659 589 PANTHER RNA BINDING PROTEIN 29 476 - -
Vivi6g04659 589 SMART ww_5 369 401 IPR001202 GO:0005515
Vivi6g04659 589 MobiDBLite consensus disorder prediction 401 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04659 Vivi-Chr6 149253912 149261071 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04659 71 237 Eukaryotic Initiation Factors Gene Family AT1G71770 26.984 3.67e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04659 K13207 - gmx:100776162 485.723