Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04658 ATGATGGAGAAAAAGAGTATGAATATGAATACCGATGATTATTCGGTTGGGTCTTTTCCTACCTATTCGCTTACAAACATGTTTGATTTATCTGAAGAAAGGAGTTTCATGGAGTTACTAGGTGTGCAGAACATGAGCAATAGTTACAGTTTGTTTGATTTACCTGCGGATGTAAAGGAATCAATCACTGAAAATGGTGGAAATGGGAAAGAATCATCTTTGAATAGTCAACAACAACAACCTGCTACTCCTAACTCTTCTTCCATTTCTTCTGCGTCCAGTGAAGCACTCAATGATGAACACAACAATAAAACTGTTGACCAAGCCAATCATCATCTCCAAAAACAGTTGAAAGCTAAGAAGACAACGAACCAGAAGAGACAAAGAGAAGCTAGAATCGCGTTCATGACGAAAAGCGAGGTGGATCATTTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTTAAAAACAGCCCTTTTCCGAGGAGTTATTATCGTTGCACTAGTGTTTCATGTAATGTGAAGAAACACGTGGAGAGGTCATTGAATGATCCAACCATTGTAGTAACAACCTATGAAGGGAAACACACGCATCCAAATCCAGTTATGGGTCGTTCTTCAGTTTCTCATGTTGGGTCTCTAATACCACCATCGCTACCAGCTGAATGCATCACCACCAACTTTGGTGGTTCTGAAAACTACATGATGCCGTCTCAATATTATAATCACCACCGTCAACAGGTTCTCTTTAATACGTTGTCGTCTATGGGTTATTCTTCAAAGATTCCTCAAGAGAGATTGGTTTGTAGTAATCCAAAGGTTATGGATCATGGTCTTCTTCAAGATGTAGTTCCTTCAAATATGTTCAAGGAGGAGTAG 888 0.3964 MMEKKSMNMNTDDYSVGSFPTYSLTNMFDLSEERSFMELLGVQNMSNSYSLFDLPADVKESITENGGNGKESSLNSQQQQPATPNSSSISSASSEALNDEHNNKTVDQANHHLQKQLKAKKTTNQKRQREARIAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKHVERSLNDPTIVVTTYEGKHTHPNPVMGRSSVSHVGSLIPPSLPAECITTNFGGSENYMMPSQYYNHHRQQVLFNTLSSMGYSSKIPQERLVCSNPKVMDHGLLQDVVPSNMFKEE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04658 295 SMART WRKY_cls 144 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04658 295 ProSiteProfiles WRKY domain profile. 139 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04658 295 MobiDBLite consensus disorder prediction 115 134 - -
Vivi6g04658 295 MobiDBLite consensus disorder prediction 65 99 - -
Vivi6g04658 295 PIRSF WRKY_txn_fact_IIc 2 295 IPR017396 GO:0003700
Vivi6g04658 295 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04658 295 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 59 238 IPR044810 GO:0003700
Vivi6g04658 295 SUPERFAMILY WRKY DNA-binding domain 136 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g04658 295 Gene3D WRKY domain 127 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g04658 295 MobiDBLite consensus disorder prediction 62 99 - -
Vivi6g04658 295 FunFam WRKY transcription factor 57 130 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04658 Vivi-Chr6 149249616 149251831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04658 81 295 WRKY Transcription Factor Family AT2G47260 49.804 3.05e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi6g04658 WRKY 1.9e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04658 6 149249616 149251831 Vivi6g04658 6 149249616 149251831 ECH