Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04652 ATGTCGAAGAGGAAGTTCGGATTCGAAGGTTTCGGCATAAACCGCCAATCCACCTACAGTTTCGAACGATCCCAACCTCCTCAACGACTCTACGTCCCTCCTTCATCTCGTAAAACCCACGACAACTACGAGGATAACGACCTCGACAACATCGACTACGACGACGATGCCACAGAAGAACCCAGCAACAATAATGGCGGCGGTGGTGGCGGTGAGGAGGAGGAGGAAGTTGATCCGTTGGACGCTTTTATGGAAGGGATACATGAAGAGATGAAGGCGGCGCCGGCACCGAAGCCGAAGGAGAAGGTGGAAGATAGATTTAAAGACGATGAGGAGGATCCTATGGAGAGTTTCTTGAGGGCGAAGAAGGATTTAGGGTTGACGTTGGCGTCTGATGCGCTGCATGCTGGGTATGATTCTGATGAGGAGGTTTATGCGGCTGCTAAGGCTGTGGATGCTGGTTTGATTGATTATGATTCGGATGATAATCCTGTTGTTGTTGATAAGAAGAAAATTGAACCTATAGCTCCTCTGGATCATACGGAGATTGATTATGAGCCGTTTACTAAGGATTTTTATGAGGAGACCCCTTCAATATCAGGTATGAGTGAGCAAGATGTAAGTGAATACAGGAAAAGTTTGGCTATTCGGGTATCGGGTTTTGATGTTCCTAAGCCGGTTAAAACATTTGAGGACTGTGGGTTTGCTTCACAAATTATGTCTGCTATAAAGAAACAAGGTTATGAGAAGCCCACGTCTATACAATGCCAGGCATTACCAGTTGTGCTTTCTGGTAGAGATATTATTGGCATAGCGAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAAGGTCCTATAGGGGTGATATGTGCACCTACTAGAGAATTAGCACATCAGATATATCTAGAGGCCAAGAAATTTGCCAAAGCATATGGTATACGCGTTTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAATTCAAAGAACTCAAGGCAGGCTGTGAGATTGTTGTTGCTACTCCTGGGAGATTGATAGACATGTTAAAAATGAAGGCATTGACAATGCTGAGAGCGACTTACCTGGTTCTTGATGAGGCTGATCGAATGTTTGATTTGGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCCGACCGCCAAACTTTGCTCTTTTCTGCAACAATGCCTTTCAAAGTTGAAAAGTTAGCCAGGGAAATCCTTTCCGACCCTACCAGAGTGACAGTGGGGGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCTTCCGATTCTGAAAAATTACCGTGGCTTTTGGAGAAGCTGCCTGAAATGATCGATCAAGGTGATACATTAGTTTTTGCTTCCAAGAAGGCCACTGTGGATGAAATTGAAGCACAGTTGGGTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAAGCTTCTCGGATGGATATTTTACAAAAGTTTAAATCTGGCACTTACCACGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTCGATATCAAGTCAATTAAAACAGTGGTCAACTTTGATATTGCTAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACGGGCCGTGCTGGTGACAAGGACGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGTTTAGTTGCTGCTGGTCAAAATGTATCCACAGAGCTGACAGAACTTGCCATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCGAGGAAAGGAGGTGGGAGAAAAGGCAAAGGCAGGGGTGGCGGTGCAGGTGGCAAAGGCGTGCGTGGGGTGGACTTTGGGCTGGGCATTGGATATAGTTCAGAGTCAAACAATGCACCATCTAACTCAGTTCCAAATCGGTCCGCCGCTGTAAATTCTCTGCGAACAGGAATGATGTCCCAATTTAAGAGTAGCTTCGTTGCTGCATCATCAAACTCCCAAAATCAAGGACTCGGTAATAATCCAAACATGGCTGTTAATAAGAGACCAGCACTCGCCGGCTTTGTATCTGGTGGATCAATTGGGGGCGATATAAATACCCATCAGCAAACTTCTTCATACAATCCTGCTACATCCGCCGTAAATTCAACCAGTCAAAGTCCTGCAGTAAATCCTGGTCAGAACAGCACAAACAGTAGCTCCAAACCTAGAGAAAGGCGGAGGCCATCTGGGTGGGATAGATAG 2322 0.4531 MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRKTHDNYEDNDLDNIDYDDDATEEPSNNNGGGGGGEEEEEVDPLDAFMEGIHEEMKAAPAPKPKEKVEDRFKDDEEDPMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPVVVDKKKIEPIAPLDHTEIDYEPFTKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPVKTFEDCGFASQIMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPFKVEKLAREILSDPTRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIEAQLGQRGFKVAALHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELTELAMKDGRFRSKRDARKGGGRKGKGRGGGAGGKGVRGVDFGLGIGYSSESNNAPSNSVPNRSAAVNSLRTGMMSQFKSSFVAASSNSQNQGLGNNPNMAVNKRPALAGFVSGGSIGGDINTHQQTSSYNPATSAVNSTSQSPAVNPGQNSTNSSSKPRERRRPSGWDR 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04652 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 259 434 IPR014001 -
Vivi6g04652 773 Pfam Helicase conserved C-terminal domain 463 568 IPR001650 -
Vivi6g04652 773 FunFam probable ATP-dependent RNA helicase DDX17 190 437 - -
Vivi6g04652 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 608 IPR027417 -
Vivi6g04652 773 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 380 388 IPR000629 -
Vivi6g04652 773 MobiDBLite consensus disorder prediction 13 32 - -
Vivi6g04652 773 CDD DEADc_DDX42 239 435 - -
Vivi6g04652 773 MobiDBLite consensus disorder prediction 611 639 - -
Vivi6g04652 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 437 IPR027417 -
Vivi6g04652 773 MobiDBLite consensus disorder prediction 722 773 - -
Vivi6g04652 773 MobiDBLite consensus disorder prediction 1 83 - -
Vivi6g04652 773 SMART ultradead3 247 449 IPR014001 -
Vivi6g04652 773 CDD SF2_C_DEAD 446 578 - -
Vivi6g04652 773 Gene3D - 191 435 IPR027417 -
Vivi6g04652 773 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 196 608 - -
Vivi6g04652 773 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 228 256 IPR014014 GO:0003724
Vivi6g04652 773 Gene3D - 436 612 IPR027417 -
Vivi6g04652 773 Pfam DEAD/DEAH box helicase 252 423 IPR011545 GO:0003676|GO:0005524
Vivi6g04652 773 MobiDBLite consensus disorder prediction 722 759 - -
Vivi6g04652 773 SMART helicmild6 487 568 IPR001650 -
Vivi6g04652 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 459 608 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04652 Vivi-Chr6 149033580 149038208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04652 225 609 Eukaryotic Initiation Factors Gene Family AT3G19760 30.928 2.37e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04652 K12835 - gmx:100814854 1268.83