Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04638 ATGGACAATAATGCATCCCCTCAACTTGAGTCAGGTGAAACATCTTTAGAGGTTAAACCAGAATCTCAAGCTTCCAGGAAAAGGAAAATGATTCAGAAAAGGGTTGTGAGTGTGAGGATTGGAGAGAATGTTAGTAAGGTGAAGAATGAAGGACTTCCTTCGGATGTATGGTCATGGAGGAAATATGGACAAAAGCCAATCAAAGGTTCTCCTTATCCAAGGGGATATTATAGATGCAGCACATCTAAAGGCTGTTCAGCCAAAAAGCAAGTAGAGAGAAGTAGCACAGATTCATCAATGCTCATCATCACCTATACTTCAACACACAACCATCCAGACCCCGCCGCCGTCTCCGCCACAAGTTCAGCTCAACAACCAAAAGAATCCGAAACCAAAACAATCCAAGATCTCCCGGTGATCTCCAACGAAGAAGACCTCCTAGAACATGCAGAACAGGAAATGAATCATACTAACAGCATTGTGACCAATGATAAAGTTACCAATGAAGAAAATTTTCATTACTTGCAAACTCCAATGGAAGATCCTTTCAAACTAAACATGGAAAAACACCATATGGATCTTGTTTTAGAGGAAAAACCACTCTGCTATGCAACACAGTTAAAGAGTTTGTCAGAATCTAAATTAGAAGAACTTGATTATTTCGATGAGCTTGAGGAGTTACCTATGTCATCATCTGTTTTTCAGTTTACTAGGAGCATTTTTTCCGATGAAAGGATTCCTGTTGCCCCTTCTTGA 756 0.4008 MDNNASPQLESGETSLEVKPESQASRKRKMIQKRVVSVRIGENVSKVKNEGLPSDVWSWRKYGQKPIKGSPYPRGYYRCSTSKGCSAKKQVERSSTDSSMLIITYTSTHNHPDPAAVSATSSAQQPKESETKTIQDLPVISNEEDLLEHAEQEMNHTNSIVTNDKVTNEENFHYLQTPMEDPFKLNMEKHHMDLVLEEKPLCYATQLKSLSESKLEELDYFDELEELPMSSSVFQFTRSIFSDERIPVAPS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04638 251 Gene3D WRKY domain 38 115 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g04638 251 FunFam WRKY transcription factor 65 36 114 - -
Vivi6g04638 251 ProSiteProfiles WRKY domain profile. 48 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04638 251 MobiDBLite consensus disorder prediction 109 133 - -
Vivi6g04638 251 Coils Coil 140 160 - -
Vivi6g04638 251 SMART WRKY_cls 53 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g04638 251 MobiDBLite consensus disorder prediction 1 30 - -
Vivi6g04638 251 SUPERFAMILY WRKY DNA-binding domain 49 114 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g04638 251 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 231 IPR044810 GO:0003700
Vivi6g04638 251 MobiDBLite consensus disorder prediction 1 19 - -
Vivi6g04638 251 Pfam WRKY DNA -binding domain 55 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04638 Vivi-Chr6 148733373 148734905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04638 9 232 WRKY Transcription Factor Family AT4G01250 39.565 3.62e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi6g04638 WRKY 3.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04638 - - gmx:100127368 330.102