Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04628 ATGGAAATCAACCCTTTTTCTCCCACTCATGATTCTCTAGAACAGCTTCTGTTCCAAAACAAACAACATAGTTTCTCTGAAATGGAATCGATTAACAATCCTCCAACAAAGGAAAACGATAAACTACCAAACATGCTCAACAATCAAGAATTCGAAGTTGGTAACTTCATGTTAGACGATATCAACTTCGACTCTTTTCAAGAAACTACATCAACATGGCCAAAGAATCACAATCACAAAGCTTCAACTCCAAAGCCTTTACAAAACAGCTCACAGATGCCGCTATCTTTATCGTGCTTAGAGATTCTGAGAAACCATGGAAGAAGAAGATTCATGAAGCTAAATGACAAAAACATAGTCAATACTAAAACATGTTTGGATTTGGAACAACCTCAAAAGATGTCAACAGAAGGAATTATAAGAGTAGCTGGTGCAAGGTATACTCAATTCTCTTCTCATTGGAGTGAAAGTTCTTGCATCCAAACACACCCTTATGGATTTGATCTTCATGGTTTATCTGAGGAAGACAGTAGAGATATTGAGCTTGCACAGTTTCTCTTTTCGGCCGCTGAAAGGGTGAGTTTTCAACAATACGAACGTGCGAAAAAGTTGCTTTTTTATTGTCAATGGAATTCGTCTTCCACAGGAAACTCGGTCCAAAGAATCGTCTTTCATTTCGCTCAAGCACTTCTGGAGAGAGTACAGAGAGAAACCGGAGGAATGATTAAAGGGTCGGAGAAAAGCGAAGAAAGTGAGTTACTTGAGAAAATGGATACAAAAAAAGCACTTGTGTGTCATCAAAAAATACCTTTTAATCAAGTTATGCAATTCATTGGCATACAAGCTATAGTTGAACAAGTTGTGTTTGAGACTAAAATTCACCTAATAGATTTTGATCTAAGAAGTGGTGTCCAGTGTATAACTTTGATGCAAGCATTGGCTGACAGAAAAGATTGCATGGTTGAGACTTTTAAGCTAACAACAATTGGATTCAACTCATGCAAGAACAAGATTGAAGAAACAGGTAAAAACTTAACTAGTTTCGCCGAATCACTGAACTTTCCCTTTTTATTTAAAGCCGTTTTAGTAGAAGATATGTTAGAAATCAAAGAAGACGATTTTGAAATCGAAGAGGATGAAGCTGTTGCGGTTTACTCTCCGTATTTTCTAAGGACTTTGATATCAAGACAAGATTGTATGGAAAATTTGATGAGAGTTATGAGATGTATCAAGCCATCTATCATGATTGTCCTTGAGATTGAAGCAAGTCTTAACTCGCCGTCTTTTGTGAACCGATTTGTCGAGGCATTGTTCTTCTACTCGGCTTTTTTCGATATCGTTGAGACGTGTATGAAGGAGGAGGATGAGTGTAGAATGATAATAGAAGGAATATTATCTGCAGGGATAAGGAATATTGTTGCAACAGAAGGAAGTGAAAGGAATGTTAGAAATGTGAAGATTGATGTTTGGAGAAGGTTCTTTGCAAGGTATAGAATGGTTGAAACTAGGTTTAGTGAGGCATGTCTTTACCAAGGTGAGTTGGTTGTTAAAGAGTTTGATTATGGGAAGTTTTGTAATGTGGAAAAGAATGGCAAGTGTTTGATTTTGGGATGGAAGGGGACTCCAATGCATTCAATTTCAGCTTGGAGGTTTCTTTGA 1659 0.3725 MEINPFSPTHDSLEQLLFQNKQHSFSEMESINNPPTKENDKLPNMLNNQEFEVGNFMLDDINFDSFQETTSTWPKNHNHKASTPKPLQNSSQMPLSLSCLEILRNHGRRRFMKLNDKNIVNTKTCLDLEQPQKMSTEGIIRVAGARYTQFSSHWSESSCIQTHPYGFDLHGLSEEDSRDIELAQFLFSAAERVSFQQYERAKKLLFYCQWNSSSTGNSVQRIVFHFAQALLERVQRETGGMIKGSEKSEESELLEKMDTKKALVCHQKIPFNQVMQFIGIQAIVEQVVFETKIHLIDFDLRSGVQCITLMQALADRKDCMVETFKLTTIGFNSCKNKIEETGKNLTSFAESLNFPFLFKAVLVEDMLEIKEDDFEIEEDEAVAVYSPYFLRTLISRQDCMENLMRVMRCIKPSIMIVLEIEASLNSPSFVNRFVEALFFYSAFFDIVETCMKEEDECRMIIEGILSAGIRNIVATEGSERNVRNVKIDVWRRFFARYRMVETRFSEACLYQGELVVKEFDYGKFCNVEKNGKCLILGWKGTPMHSISAWRFL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04628 552 Pfam GRAS domain family 183 550 IPR005202 -
Vivi6g04628 552 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 543 IPR005202 -
Vivi6g04628 552 ProSiteProfiles GRAS family profile. 173 550 IPR005202 -
Vivi6g04628 552 MobiDBLite consensus disorder prediction 72 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04628 Vivi-Chr6 148683862 148693970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04628 180 551 GRAS Transcription Factor Family AT3G03450 29.024 5.69e-46 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi6g04628 GRAS 1.4e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04628 - - gmx:100791952 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04628 6 148683862 148693970 Vivi6g04628 6 148683862 148693970 ECH