Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04625 ATGGCTAGGAATTTGAAGAATATTCAATCCCATCTTTCGAATGCCATGTTAGAAACATCAAGAAATGAATCATTACAAACTGAGAAAAATAATTTTCAAAAACTTTCTTCAAGAATGGATCATCCTATGTACAAGTTCAATAGCTCAACCACTCAAGCTTTGGAAGAAGAAGATGACAATATCTACATTCTAGATGCAATATTTATGGAAAGTGTCAAGATCCCATACGTCAACAGTTTGCCACCATATACAGTTTGGATCCCTTTATCCAGAAATGAAAAAATGGCGGAAGATGACTCGAGTGCTAGAAGAAAAGATGTATTTTATGATCATCGTCGAGGTGTAACAATAATACGTAGTGATAGTGATGAAGAGTCAGAAGAGGACGAGGAAGCTAGACACAACTTTTCAGAAGGCGAAGACAAATTTTTGAGGATGGTATTTGAAGAACATGGTTTAGCTGAAGAGGTGTTGAATATTGTTAGCAAAACAATCGAGCGCCCGAGTTCTGAAATTCTGGAGAGGTATAAAATTTTAGAGGAAAATGACCAAAGTTCTATATATCATGAAGAAAGTGAATCTCACATTGAGTCATTTTTTAACAAAAGTTTGAGTGAAACTTTAGAGGCTTTTGACCCCCTTTTATGTCGTAAATGCATGATCTTTAATTGTTCTTTGCATGGAAATTCTCAAAAGATAATATATCCGAGGGAAAAACAACTAATTTGGTCAGGACCAAAAGATGAACAAAAACCATGTAGTGATCATTGTTACATGGCTAATTCAATGGAAGGACAAGTTGAAGAAGATTTGAGTGTTTCAAATTGGAAACTTTTGGAGAAAGAATTATACTTGAAGGGAGTAGAAATGTTTGGGAGAAATAGTTGCCTTATATCTAAAAACTTATTTTTTGGATGGAAGACTTGCAAGGAAGTTGCTAGATACATGCAATATGAAATGTCAATTCTACATGGATCCATGGACCAAAATGAAAAATTTAGTGAAATGTCATCCAAGCCACGTAGGCATAAAAAACAGGTCAAACCTAAGAGGCTTAAAAAATCTTCAAAGTCAGCAGGAGTTCCATCTACGTATAAAAATATGACTAATGGGAAAGCAGCTAATATTCAATATACGCCTTGTGAATGTGAAGGTTTGTGTGGAAAGAAATGTTCTTGTGTTGATAATGGATTTTGTTGTGAAAAATATTGCGGGTGTTCTAAGTTGTGTATGAAACGATTTGGAGGGTGTCATTGTATTATAGGTCAATGTAAAACTCGAAAATGTCCATGTTTTGCAGCAAATCGAGAATGTGACCCAGATATATGCCGGAATTGTTGGGTTAGTTGTGGAGACAATTTATTAGGAGAGTCATCTAATCGTGGAGAGAGTCAATGCGAAAATATGATATTTCTTTTGAAGAAAAAACAAAAGGTTCTTTTGGGAAGGTCTAATGTTGTTGGATGGGGAGTTTTCATAAAGAATCCTGTAAACAAAGATGAGTTTATAGGAGAGTACACTGGTGAAATACTCACTCACGAAGAAGGTGATATACGTGGAAAATTATACGACAGTGTCGACTTTTCTTTTCTTTTCAACTTGAATCATGATTATTGTCTTGATGCTTATCGCAAAGGAAACAAGTTAAAATTCGCAAACCACTCGGCAAATCCCAATTGCTACGCAAAGCTTATGTCTGTCGCTGGAGATCATCGAATGGGAATATTTGCAAAGAAACGCATTGAAGCTGGTGAGGAGCTTTTTGTTGATTACAACTATGATGAAAAACTTCTAAGCCTACGATGGTTTCGTGAATTTGTAGATGAAGATAAATCCAAGAAACGTGATCCAACATTTTCTGATAAAAAAACTAAGTTTCGTCGTTGA 1887 0.3529 MARNLKNIQSHLSNAMLETSRNESLQTEKNNFQKLSSRMDHPMYKFNSSTTQALEEEDDNIYILDAIFMESVKIPYVNSLPPYTVWIPLSRNEKMAEDDSSARRKDVFYDHRRGVTIIRSDSDEESEEDEEARHNFSEGEDKFLRMVFEEHGLAEEVLNIVSKTIERPSSEILERYKILEENDQSSIYHEESESHIESFFNKSLSETLEAFDPLLCRKCMIFNCSLHGNSQKIIYPREKQLIWSGPKDEQKPCSDHCYMANSMEGQVEEDLSVSNWKLLEKELYLKGVEMFGRNSCLISKNLFFGWKTCKEVARYMQYEMSILHGSMDQNEKFSEMSSKPRRHKKQVKPKRLKKSSKSAGVPSTYKNMTNGKAANIQYTPCECEGLCGKKCSCVDNGFCCEKYCGCSKLCMKRFGGCHCIIGQCKTRKCPCFAANRECDPDICRNCWVSCGDNLLGESSNRGESQCENMIFLLKKKQKVLLGRSNVVGWGVFIKNPVNKDEFIGEYTGEILTHEEGDIRGKLYDSVDFSFLFNLNHDYCLDAYRKGNKLKFANHSANPNCYAKLMSVAGDHRMGIFAKKRIEAGEELFVDYNYDEKLLSLRWFREFVDEDKSKKRDPTFSDKKTKFRR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04625 628 CDD SET_EZH 482 593 - -
Vivi6g04625 628 Pfam SET domain 488 592 IPR001214 GO:0005515
Vivi6g04625 628 ProSiteProfiles CXC domain profile. 347 463 IPR026489 -
Vivi6g04625 628 FunFam Putative histone-lysine N-methyltransferase EZH2 378 594 - -
Vivi6g04625 628 Pfam CXC domain 416 447 IPR041355 -
Vivi6g04625 628 ProSiteProfiles SET domain profile. 477 592 IPR001214 GO:0005515
Vivi6g04625 628 MobiDBLite consensus disorder prediction 341 355 - -
Vivi6g04625 628 SMART CXC_2 412 449 IPR033467 -
Vivi6g04625 628 Gene3D SET domain 378 594 IPR046341 -
Vivi6g04625 628 SMART set_7 477 598 IPR001214 GO:0005515
Vivi6g04625 628 MobiDBLite consensus disorder prediction 333 364 - -
Vivi6g04625 628 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 272 609 IPR045318 GO:0006338|GO:0042054
Vivi6g04625 628 SUPERFAMILY SET domain 376 595 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04625 Vivi-Chr6 148671373 148674764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04625 466 591 C2H2 Transcription Factor Family AT2G23740 27.972 2.67e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi6g04625 SET 5.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04625 - - vvo:131614966 1284.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04625 6 148671373 148674764 Vivi6g04625 6 148671373 148674764 ECH