Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04620 ATGGCCAACTCTAGTACAAGTGTTCTTCTTCATCTTATTCTTCTTTTATTATCACATATTTTATTCCAAGTTGCTACATGTGGATCCATAGTAAAGTTTCTTCCTGGATTCAATGGACCTCTTCCTTTTGTTCTTGAAACTGGGTATGTGGGAGTGGGAGAAAATGATGATGTGCAAGTGTTTTACTATTTCATTGAATCTGAGAACAATCCAAAGGAAGATCCTCTCATGCTTTGGCTCACTGGTGGACCTGGCTGCTCTGCTTTGTCTGGCCTTATCTTTGAAATTGGACCTCTTGGATTTAGAAAGGAGGAATACAATGGGAGTTTGCCTAATTTGATTTTGAAGCCACACTCATGGACAAAGGTGAGTAACATTATATTTGTAGATTTGCCTGTATACACAGGCTTCACTTATGCCACAACAAATCCAGGGTCTGATCGAAGCGACTCGATATTAGTTCATCAAGCTCATCAATTTCTTAGAAAGTGGTTAGTTGATCATCCAAAATTTCAATCAAATGAAATTTATATTGGTGGAGATTCATACTCTGGAGTTCCTGTTCCAGTAATTGTTCATAAAATTGTAGAAGGAAATGAAAAAGGTACCCAACCTTGGATTAATCTCCAGGGATACTTGTTGGGGAATCCTGTAACAGACAGAAAGGAAAAAAACTATCTAATCCCTTTTGCTCATGGAATGGGACTCATATCTGATGAATTGTACAACTCACTCCAAATAAATTGCAATGGAGAGTATATAAATGTAGATACCACAAATGTCTTATGTTCTAGAGATATCAAATCATTTGACAAGTGTACATCAGGACTTAATACAGCTCATACTTTAGACCCAAAATGTGAGTGGCGTGATGATACTGAAAAGTTTCTGAGGAGATCTCTAATTAAGAAATATCCTTCCAACTTTCTCACTACAAATCTCAGACTGCCTCCAATAAGCTGTCGAAGTTATTCGTATTTTCTTTGCGGTTTTTGGGCCAATGATGATAATGTTCGCAAAGCATTGCACATACGTAAGGGTAGTATTGGAAAATGGCACCGCTGTTCCTATAATATACCTTTTAAGAGAGATATCTTTAACACCTATGACTATCATGTAAATCTCAGTAGAAAAGGCATTCGTTCACTAATTTACAGTGGCGATCATGACATGACAGTTCCATTCTTAGCGACACAAGCATGGATTAGATCTTTAAACTATTCAATTGTTAATGATTGGAGACAGTGGCATACAAATGACCAAGTTTCAGGATATACAAGGACTTACTCTAATAATATGACATTTGCAACTGTGAAGGGTGGAGGACACACAGCTCCAGAGTTCCGACCCGAAGAATGTTTTGACATGTATAGTAGGTGGATATCAAAGAGAGTTTTGTAG 1401 0.374 MANSSTSVLLHLILLLLSHILFQVATCGSIVKFLPGFNGPLPFVLETGYVGVGENDDVQVFYYFIESENNPKEDPLMLWLTGGPGCSALSGLIFEIGPLGFRKEEYNGSLPNLILKPHSWTKVSNIIFVDLPVYTGFTYATTNPGSDRSDSILVHQAHQFLRKWLVDHPKFQSNEIYIGGDSYSGVPVPVIVHKIVEGNEKGTQPWINLQGYLLGNPVTDRKEKNYLIPFAHGMGLISDELYNSLQINCNGEYINVDTTNVLCSRDIKSFDKCTSGLNTAHTLDPKCEWRDDTEKFLRRSLIKKYPSNFLTTNLRLPPISCRSYSYFLCGFWANDDNVRKALHIRKGSIGKWHRCSYNIPFKRDIFNTYDYHVNLSRKGIRSLIYSGDHDMTVPFLATQAWIRSLNYSIVNDWRQWHTNDQVSGYTRTYSNNMTFATVKGGGHTAPEFRPEECFDMYSRWISKRVL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04620 466 FunFam Carboxypeptidase 369 463 - -
Vivi6g04620 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Vivi6g04620 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Vivi6g04620 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Vivi6g04620 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Vivi6g04620 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 30 450 IPR001563 GO:0004185|GO:0006508
Vivi6g04620 466 FunFam Carboxypeptidase 320 465 - -
Vivi6g04620 466 Gene3D alpha/beta hydrolase 40 465 IPR029058 -
Vivi6g04620 466 FunFam Serine carboxypeptidase-like 11 25 466 - -
Vivi6g04620 466 Pfam Serine carboxypeptidase 35 462 IPR001563 GO:0004185|GO:0006508
Vivi6g04620 466 SUPERFAMILY alpha/beta-Hydrolases 31 463 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04620 Vivi-Chr6 148595348 148603775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04620 25 54 Calmodulin-binding Proteins AT2G22960 73.333 1.72e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04620 K16296 - gmx:100792006 767.303