Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04610 ATGGAAGAAATCGTGTTACTGGTCGATGATTTGAAGCTACTTTCAGGAATTTCTCGCTGTAGAATTTGCCATGAAGAAGAGTTCGAAACCACCGAAACCTTGGAAGCACCATGTTCTTGTTCCGGAACCGTTAAGTTTGCTCATAGAGATTGTATACAAAGATGGTGTAACGAAAAAGGAAATATAATTTGTGAAATATGTCTCCAGCAATATGAACCTGGATATACAACTCTTCCAAAGAAGTCAGAGATAAATGATGAAGCAATGTCCATAAGGGTAGAGGAAGAAGCTTCAGACGCAAGAGAAAATATGGTGGAAGGAACTGTAATAGAAAGTGATTATTCAGAATGCAGCTCTACTGCTGACAGAAGTGCAACTCACTGTCGATCACTTGCAATAGCTTTTACAGTTGTGTTATTGGTAAGACATTGTCTTGTAGTGCCTACAAGTGGAGCTGAAGATTACCCATTTACACCTCTTACAGTCATTGTACTAAAGGCTCTTGGAATTATTATACCCATGTACTTAGTTACAAAGACAATTGGAGCCATTCAGAATACTATTCGGTGCTATCGAGGTTCTGAATATGACACATCCCTTCCTGAGGAAAATGACAGAAATGATGCAACTCACCAAGAAAATTTAATACATTCATAA 657 0.382 MEEIVLLVDDLKLLSGISRCRICHEEEFETTETLEAPCSCSGTVKFAHRDCIQRWCNEKGNIICEICLQQYEPGYTTLPKKSEINDEAMSIRVEEEASDARENMVEGTVIESDYSECSSTADRSATHCRSLAIAFTVVLLVRHCLVVPTSGAEDYPFTPLTVIVLKALGIIIPMYLVTKTIGAIQNTIRCYRGSEYDTSLPEENDRNDATHQENLIHS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04610 218 MobiDBLite consensus disorder prediction 198 218 - -
Vivi6g04610 218 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 187 IPR033275 -
Vivi6g04610 218 Pfam Protein of unknown function (DUF3675) 73 181 IPR022143 -
Vivi6g04610 218 SMART ringv_2 19 68 IPR011016 GO:0008270
Vivi6g04610 218 CDD RING_CH-C4HC3_MARCH 20 67 - -
Vivi6g04610 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Vivi6g04610 218 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Vivi6g04610 218 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Vivi6g04610 218 SUPERFAMILY RING/U-box 19 72 - -
Vivi6g04610 218 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04610 Vivi-Chr6 148187212 148189261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04610 20 67 C3H Transcription Factor Family AT5G05830 40.385 2.60e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04610 - - mtr:11420992 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04610 6 148187212 148189261 Vivi6g04610 6 148187212 148189261 ECH
Vivi6g04610 6 148187212 148189261 Vivi1g05364 1 117420140 117422047 PCT