Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04600 ATGGGAAGAGCACCTTGTTGTGAGAAAGTGGGTTTGAAGAGAGGAAGATGGACTGAAGAGGAAGATGAAATTTTGACTCAATATATTAAAGCCAATGGAGAAGGTTCTTGGAGGTCACTACCTAAAAATGCAGGGTTGCTTAGATGTGGAAAAAGTTGTAGATTAAGATGGATAAACTATTTGAGAGATGATCTTAAAAGGGGAAATATTTCTACTGAAGAAGAAGCTCTTATTGTCAAGTTGCATGCTTCTTTTGGCAACAGGTGGTCTTTGATTGCAAGTCATTTGCCAGGAAGAACAGACAACGAGATTAAAAACTACTGGAACTCTCACTTAAGTAGAAAAGTTTACACTTTCCGAGGAACATCATCAACAACAAATTTCGATAATGTTAAAGAGATTCCATCACAAGGAATCTTAGTTAATACACCTCCCAAAAGAAGAGGTGGTAGAACTAGCAGGAAGGCCATGAAGAAAAATAAACACTATATCCAAAAAAAATTCGAAAGCCCAAATAAGCCTTCTAATGGCGAAGACAGCCCAAATGGGCTTCAGTTGCCATGCATTGACGGTAAAAATATTGAATATGGTCCTGACAACATGTTAGGACCAAATCCAAACCTAAATCCAAAGGTCATTAATGATAAAGAGTCGTTGAATTTTAATGATATTATTATAAACACATTCGAGGTGGAAAAAGAAAAAGAAAGTAATGATGATATGATTGTATATAATGAAAAAGTTAGGGACACAAGTACAGGTACTAACAAGATGGGAATACAAGACCATGAGAATAATAGTGTGACAAGTCGAAGTTCGAATGATTTAGGTTTGGAGGATAACTTGGATTGGGATAGTGTTATGCCTTTGTTGAATCAGAAAGCACAATCTTTGTCATGGGAACTAAGTGAAAACATGTTGACTTGGTTGTGGGATGATGATGAATGGGAAAAGGATTTTAACAAGTTTAGAGAGATTGATACTTGGAAGCAAAATGGTGTGTTTTCTTGGTTTTAA 1017 0.3599 MGRAPCCEKVGLKRGRWTEEEDEILTQYIKANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRDDLKRGNISTEEEALIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYTFRGTSSTTNFDNVKEIPSQGILVNTPPKRRGGRTSRKAMKKNKHYIQKKFESPNKPSNGEDSPNGLQLPCIDGKNIEYGPDNMLGPNPNLNPKVINDKESLNFNDIIINTFEVEKEKESNDDMIVYNEKVRDTSTGTNKMGIQDHENNSVTSRSSNDLGLEDNLDWDSVMPLLNQKAQSLSWELSENMLTWLWDDDEWEKDFNKFREIDTWKQNGVFSWF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04600 338 Gene3D - 71 116 - -
Vivi6g04600 338 CDD SANT 16 61 IPR001005 -
Vivi6g04600 338 Gene3D - 11 67 - -
Vivi6g04600 338 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 217 - -
Vivi6g04600 338 MobiDBLite consensus disorder prediction 253 274 - -
Vivi6g04600 338 FunFam Myb transcription factor 71 116 - -
Vivi6g04600 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi6g04600 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi6g04600 338 MobiDBLite consensus disorder prediction 142 203 - -
Vivi6g04600 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi6g04600 338 MobiDBLite consensus disorder prediction 148 162 - -
Vivi6g04600 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi6g04600 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi6g04600 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi6g04600 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi6g04600 338 FunFam MYB-related transcription factor 13 66 - -
Vivi6g04600 338 CDD SANT 71 112 IPR001005 -
Vivi6g04600 338 SMART sant 66 114 IPR001005 -
Vivi6g04600 338 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04600 Vivi-Chr6 148015781 148018332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04600 1 171 MYB Transcription Factor Family AT5G49330 64.641 1.08e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g04600 Myb_DNA-binding 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04600 K09422 - gmx:100793350 295.049