Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04588 ATGGCGACGAGAAACCGAACTTCAGAGTTCAGAAAGTACAGAGACACCGTCAAAAGCTTACGCACTCCTCTTTCTTCATCAGCTTCCGCTTCTTCCGGTGGTCCTGTCATCGAAATGGTTAACAGTTCGCTTCTTCGTTCCAATAACGGATCTTCTTATACTCCTCTCAGTACGCAAGACCCTGGTCCATCCTCCTCTAGTGATGCGTTTACTGCGGGTATGCCGCCAGATTGGGTGGATGATTCTGAAGAAATAGCTACGAATATACAACGGGCGAAGGTTAAAATGTCTGAGTTAACTAAAGCTCATGCAAAGGCTTTAATGCCTTCTTTTGGCGATGGTAAAGACGATCAGCGGCAGATTGAGACTCTAACTCGGGAAATTACGGCTCTCATTAGAAAGTCTGAAGTGAGGCTGAAAAAACTCTCTGCTGGTAGAGGATCTTCTGAGGAATCTAATGTCAGAAAAAATGTGCAGCGTTCACTTGCTACAGACCTTCAGAGCCTGTCAATGGACCTCCGGAGGAAGCAGTCAGCATATTTGAAACGTTTGCAGAAACAACAAGAGGGTTATGATGGGATTGACTTGGAGATTAACTTTAACGGGAGTAAATCTGGATTGCAGGATGATGAATTTGATGATGTGGGTTTTAGCGAAGCGCAAATGACAAAGCTAAAGAAAAACGAGCACATCTCAGCGGAAAGAGAAAGAGAAATTGATCAGGTCGCTAGTTCCGTCCACGAACTTGCTCAGATCATGAAGGATCTCTCTGTCCTTGTTATAGACCAGGGAACAATTGTAGATAGAATCGACTACAACATTCAGAGTGTTGCTACAACTGTCGAGGAGGGCTTTAAGCAGTTACAAAAGGCGGAAAGAACACAGAAAAAAGGAGGGATGATTACATGTGCAACCGTGCTTGTTATAATGTGCTTTGTCATGCTAGTTCTGTTGATAATCAAGGAGATAATTTTCTAG 978 0.4366 MATRNRTSEFRKYRDTVKSLRTPLSSSASASSGGPVIEMVNSSLLRSNNGSSYTPLSTQDPGPSSSSDAFTAGMPPDWVDDSEEIATNIQRAKVKMSELTKAHAKALMPSFGDGKDDQRQIETLTREITALIRKSEVRLKKLSAGRGSSEESNVRKNVQRSLATDLQSLSMDLRRKQSAYLKRLQKQQEGYDGIDLEINFNGSKSGLQDDEFDDVGFSEAQMTKLKKNEHISAEREREIDQVASSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATTVEEGFKQLQKAERTQKKGGMITCATVLVIMCFVMLVLLIIKEIIF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04588 325 MobiDBLite consensus disorder prediction 19 71 - -
Vivi6g04588 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi6g04588 325 Gene3D - 74 283 - -
Vivi6g04588 325 Pfam SNARE domain 265 317 IPR000727 -
Vivi6g04588 325 SMART SynN_4 69 185 IPR006011 GO:0016020
Vivi6g04588 325 PANTHER SYNTAXIN 80 311 IPR045242 -
Vivi6g04588 325 MobiDBLite consensus disorder prediction 1 80 - -
Vivi6g04588 325 FunFam Syntaxin-43 75 283 - -
Vivi6g04588 325 MobiDBLite consensus disorder prediction 1 18 - -
Vivi6g04588 325 SUPERFAMILY t-snare proteins 74 284 IPR010989 GO:0016020|GO:0016192
Vivi6g04588 325 CDD SNARE_syntaxin16 233 290 - -
Vivi6g04588 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Vivi6g04588 325 SMART tSNARE_6 224 291 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04588 Vivi-Chr6 147919492 147925425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04588 1 325 SNARE and Associated Proteins AT4G02195 67.791 4.21e-160 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04588 K08489 - gmx:100803629 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04588 6 147919492 147925425 Vivi6g04588 6 147919492 147925425 ECH
Vivi6g04588 6 147919492 147925425 Vivi1g05582 1 122628509 122634201 ECH