Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04574 ATGAGAGAGGTTTGGAATATAGGAACATGTAGTCAACAAGAAGAAGAAGAAAAACCATCTAATACAAACACTATTATGAGCCGTTTTGAGTCACCAACTTCTGCTTTTTATGCAACAGAAACTTGCATGGGTTTTGCAGAATTTGATAATAATCAATCTTTGAATACTCAAGTGCATAAGATCAATGATTTGGAGTATCCTTTATGTCAATCTTTAAGGGAAAACAATCAATTTTTGAATTCATCAAACCAATCTGATCCCAACTTTGAGTTGTCAAATACTTTGCAAGCATTGGTGAAATCTCAATTGAATGGTAATCATTGTGTTAGATTACCAGAAAACCACAATAAATTTTCATGTGAGAATTTTTCTAGGATCATGCCTTTTCCATTTGAACAACAGAAGTTGTTTTTCGATGATCTTGCCTCGGTTAACAGAAGCTCATCATTTTGTAACAAAGGAAATCATGACTATATGGTTGCTCGCGGAACATATCATTTATCAGTTGAGCAACTGAATTTCTCTTCTCAACATGAGATGTTATCTCCAACAATTTCATCAGGAAGTATCTCAAATTCTGTTGGAAACTCTTCTTCTAATGGAAATGTAGTCTCGAGTAAAACGAGAATTAGATGGACAAAGGATCTTCATGAAAAGTTTGTTGAGTGTGTGAATCGCCTCGGAGGCGCTGACAAGGCAACACCAAAAGCTATATTGAAGATGATGGATTCTGAAGGTTTGACCATATTTCATGTGAAAAGTCATTTGCAGAAATATAGAACTGCAAAATTCATGCCAGAGACTTCAGGGAAATCTGACAAAAGAATCCATACAGAAGATCTGCATCATGTTGGTGTTAAAGCTGGCTATCAAATTAAGGAAGCACTTCAACTTCAATTAGAAGCACAAAGACGTCTTCATGAACAACTAGAGATTCAAAGAACATTACAATTACGACTTGAGGAACAAGGCAAACAGCTGAAAAAGATGTTTGATCAGCAGCAGAAGACCTGTACCAACTTCTTCAATACTCCAACTGCAATCAACAATGATGATACAAAAACTAGTCACAAAGATGTTGAAGTTTCTATTTCTGAAGGGGCTGAAAATTCTTTACTCCCTTGTTTAACCTCTCCGAATGCATAA 1146 0.356 MREVWNIGTCSQQEEEEKPSNTNTIMSRFESPTSAFYATETCMGFAEFDNNQSLNTQVHKINDLEYPLCQSLRENNQFLNSSNQSDPNFELSNTLQALVKSQLNGNHCVRLPENHNKFSCENFSRIMPFPFEQQKLFFDDLASVNRSSSFCNKGNHDYMVARGTYHLSVEQLNFSSQHEMLSPTISSGSISNSVGNSSSNGNVVSSKTRIRWTKDLHEKFVECVNRLGGADKATPKAILKMMDSEGLTIFHVKSHLQKYRTAKFMPETSGKSDKRIHTEDLHHVGVKAGYQIKEALQLQLEAQRRLHEQLEIQRTLQLRLEEQGKQLKKMFDQQQKTCTNFFNTPTAINNDDTKTSHKDVEVSISEGAENSLLPCLTSPNA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04574 381 Pfam MYB-CC type transfactor, LHEQLE motif 291 337 IPR025756 -
Vivi6g04574 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 198 363 IPR044848 GO:0003700
Vivi6g04574 381 Pfam Myb-like DNA-binding domain 211 260 IPR001005 -
Vivi6g04574 381 Gene3D - 206 265 - -
Vivi6g04574 381 SUPERFAMILY Homeodomain-like 205 261 IPR009057 -
Vivi6g04574 381 Coils Coil 293 313 - -
Vivi6g04574 381 MobiDBLite consensus disorder prediction 1 25 - -
Vivi6g04574 381 FunFam Myb family transcription factor 206 264 - -
Vivi6g04574 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 262 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04574 Vivi-Chr6 147685512 147688815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04574 194 339 G2-like Transcription Factor Family AT4G28610 55.705 8.62e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi6g04574 Myb_DNA-binding 3.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04574 - - cam:101504038 533.487