Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04568 ATGGAAAACGTGAAGAAGAGAAAATTGGAGGAGACAGAAAACAAAAGTGAATCTTCTTCCAATATAGAGATTCGAAGTCTCGTTGAATGTATTCCTAAACCTCAACTTGTTGATCTTCTTTCTAAACTAGGGTGTCAAAATCCTTCTATTGCAGAACAAATCAAAACTATTGCAGCTCCTTATGTTGCGGCTTTCGATCGAAAGATTTTCGTTAGCAGCTTGAACTACGTTACAGAAACATCTACTTTGAGACAGAAATTTCAAGAGTATGGAGAAATTGAGAATGCAATTGTGATTCGTGATAGAGTCACGGGAAAATCCAAGGGCTATGGATTTGTCACTTACAAAGATATTCAATCAGTTAATAATGCATTGAGCAAACCTAAGATTGTTATTGATGGGGCATCGGTTGCATGTCGTCTAGCTGATGATGGCCAACGAGTTTCGCACAGGAAGCTTTTTATTGGAAACTTACCACCAATTTTTACAAATGAAAACCTGTGCGACAAATTTAAGATGCATGGTGAAATAGAGGAAGCAATTGTATGCAAGAATCCAATTGGAGAATGGAAAAATCGATATGGATTTGTTACGTACAAGACAGTAGAGGCTGCAAAGAAGGCCATAGATTACAATGATCTTCATGAGGGAAGTATGACTGTAAAATACGCTGATTCGCAGAGTCGGCCACCTTTGCCTGGAGGAGTAGCTTCAAGGGCAGTTCTACCTATGACTTCAGGTCCTGGATACGTGCGGCCTCAAAATGTTGATGTTAATTATGGTGCCCGAAATGGTTATACATACCCTCAAAGTGCGGCAGTACTACCATATGCTGCACCTCCTTACCCCCAAAGTGCTGCAGTGCCACCATCTGATGCACCTCCTTACCCCCAAAGTGCTGCAGTACCAACATATGCTGCACCTCCTTACCCCCAAAGTGCTGAAGTGCCACCATCTGCTGCACCTCCTTACCCCCAAAGTGCTGCAGTACCAACATATGCTGCACCTCCTTATCAAACAAATGGACAGGGTCCTTATCCTCATGTTTCTGCAGTGACAGGCCAATTTGGGCATCAGTATTACTACAACAATCCCTATCCCAACCAATGA 1110 0.4234 MENVKKRKLEETENKSESSSNIEIRSLVECIPKPQLVDLLSKLGCQNPSIAEQIKTIAAPYVAAFDRKIFVSSLNYVTETSTLRQKFQEYGEIENAIVIRDRVTGKSKGYGFVTYKDIQSVNNALSKPKIVIDGASVACRLADDGQRVSHRKLFIGNLPPIFTNENLCDKFKMHGEIEEAIVCKNPIGEWKNRYGFVTYKTVEAAKKAIDYNDLHEGSMTVKYADSQSRPPLPGGVASRAVLPMTSGPGYVRPQNVDVNYGARNGYTYPQSAAVLPYAAPPYPQSAAVPPSDAPPYPQSAAVPTYAAPPYPQSAEVPPSAAPPYPQSAAVPTYAAPPYQTNGQGPYPHVSAVTGQFGHQYYYNNPYPNQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04568 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 133 IPR000504 GO:0003723
Vivi6g04568 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 213 IPR000504 GO:0003723
Vivi6g04568 369 Gene3D - 145 230 IPR012677 -
Vivi6g04568 369 PANTHER GEO13361P1-RELATED 60 147 - -
Vivi6g04568 369 MobiDBLite consensus disorder prediction 333 348 - -
Vivi6g04568 369 CDD RRM_SF 153 213 - -
Vivi6g04568 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 148 IPR000504 GO:0003723
Vivi6g04568 369 MobiDBLite consensus disorder prediction 309 350 - -
Vivi6g04568 369 SUPERFAMILY RNA-binding domain, RBD 150 237 IPR035979 GO:0003676
Vivi6g04568 369 Gene3D - 64 144 IPR012677 -
Vivi6g04568 369 SUPERFAMILY RNA-binding domain, RBD 66 145 IPR035979 GO:0003676
Vivi6g04568 369 SMART rrm1_1 68 140 IPR000504 GO:0003723
Vivi6g04568 369 SMART rrm1_1 152 222 IPR000504 GO:0003723
Vivi6g04568 369 MobiDBLite consensus disorder prediction 309 325 - -
Vivi6g04568 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 226 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04568 Vivi-Chr6 147589439 147591009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04568 23 142 C2H2 Transcription Factor Family AT2G19380 33.333 9.23e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04568 K12741 - gmx:100802911 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04568 6 147589439 147591009 Vivi6g04568 6 147589439 147591009 ECH