Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04567 ATGCTCGACATAACAAAACTCAGATTAACATTCAAATTTTTCAACCTTAAACCCTCCCTAAACCCTAGATTTCACAGCACAGCAAAAACCTCACTTCAAATTCAATTACACCCAAAACCCAAACTTCCCTCAAAATCCACCATCAAAGAAGCTCAAGCCGCATTACTAGACTATCTTCATTCCACAAGAAGCTTGCAGTTTCTAGACGCGGACAACATGTGCAAAAACTCACCTTTTTTCATTCAAACCCTCGTCGAAAAAACCCTAAAAAACGAGAAGCTTGTAAACCCTAAGCGCTTGATTTCTCGGTATTTACGTTACCATCCCATCAACGAATTCGAACCGTTTTTCGAGAGTTTGGGTTTGAAGCCTTCGGAATATGTACCTCTTCTTCCTCGTGACTTGATTTTCCTCAATGATGATCCTGTTATGATGGAGAATTATCATACTCTTTGTAACTATGGGGTTCCGAGGTCCAAAATGGGGAAGATTTTCAAGCAGGCACCGGAGGTTTTTAGATTTGAAAATGGGGTTTTGGGTTTGAAGATTAAGGCTTATGAGAAGATGGGCGTTTCGTCTTCGGTTTTAGTGAATGCTGTTGCTGTAAGTCCTGGGATTTTGGTTGGTGATGTTAATGTTGATTTTGTGGAGGTTGTGGATATGTTGAAGGATATTGTTGCTGATGGTGGTGATGTTGATAGTGGTTGGATTAAGTGGGATTTTTTGGATGAGGTTTATTGTAATTGGGGCTTGATGCGTGAGCTCTTGTGCTTGCTTTCGGATGCTGGTTTGAGGAAGGAAGAGTTGGCGGAGATTATTCAACGTAGTCCTTGTGTTGTTTTTGAGGAATCGGGAGGTAGGACGCTCTCTATGATTGGGTTTTTGACTAAATTTGGATTGTCTGTGAACCAGATTGCCCCTGTGTTTCTTGAGTTTCCGCAGATTCGGATGGTCAAGTTTTTAGCCAACTTGAGAGTGTGTTTTCAGCTTCTGACTGAGATTGAGATGGAAGCTGCAGAGATTGGAAAGATTTTCCAGTCTCACACGTTATTTATTGGTTCATATACTCTTAAGACGACAAAGAGTTTGCTCGGTTGCTTGAATGTTGGCAAGAAGCGTCTCTGTGCCATAGTGCAGGAGAATCCTCATGAAATGAAGAAATGGATTCTGGGGAGGAGAGTTAAGCCTTTGGTTAGCTTAAGGGAGGAGGAAGAGGAAAGATCGAAGGCGGGGAAGACAGAGTTCTTGCTGCGCTTAGGATATGTGGAAAATTCGAAACAAATGAATACGGCATTTAAGGTGTTCAGAGGTAAGGGAGCTGAACTTCAGGAGAGATTTGATTTTATTGTTAATGCTGGCTTGACACGTGACGAAGTTTGTAGAATGATTAGAGTTTCCCCGCAGATTCTTAATCAGAACACAGATAGAGTCAAGATGAAAATCGAGTATCTTAAAAAGAAAGGATATTCTGTATCAGATTTAGTGAGTTTTCCATCTTATCTTTCATACAAATCTCTAAGAGTTAAACATAGGTTGTCAATGTATAACTGGCTCATAGACAATGGAGCCGTAGAGCCCGGGCTTGCTTTGAGCACCATAATTGCATGCACAGACAGAATATTCTTACAAAGTTATGTAAATCGCCATCCCTCTGGCCTTCAAGTTTGGGAAGATTTGCAGAAAGAAATTCATTCTGAAGATTAA 1704 0.4085 MLDITKLRLTFKFFNLKPSLNPRFHSTAKTSLQIQLHPKPKLPSKSTIKEAQAALLDYLHSTRSLQFLDADNMCKNSPFFIQTLVEKTLKNEKLVNPKRLISRYLRYHPINEFEPFFESLGLKPSEYVPLLPRDLIFLNDDPVMMENYHTLCNYGVPRSKMGKIFKQAPEVFRFENGVLGLKIKAYEKMGVSSSVLVNAVAVSPGILVGDVNVDFVEVVDMLKDIVADGGDVDSGWIKWDFLDEVYCNWGLMRELLCLLSDAGLRKEELAEIIQRSPCVVFEESGGRTLSMIGFLTKFGLSVNQIAPVFLEFPQIRMVKFLANLRVCFQLLTEIEMEAAEIGKIFQSHTLFIGSYTLKTTKSLLGCLNVGKKRLCAIVQENPHEMKKWILGRRVKPLVSLREEEEERSKAGKTEFLLRLGYVENSKQMNTAFKVFRGKGAELQERFDFIVNAGLTRDEVCRMIRVSPQILNQNTDRVKMKIEYLKKKGYSVSDLVSFPSYLSYKSLRVKHRLSMYNWLIDNGAVEPGLALSTIIACTDRIFLQSYVNRHPSGLQVWEDLQKEIHSED 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04567 567 Gene3D Transcription termination factor 3, mitochondrial 287 560 IPR038538 -
Vivi6g04567 567 Gene3D Transcription termination factor 3, mitochondrial 75 228 IPR038538 -
Vivi6g04567 567 SMART mt_12 460 490 IPR003690 GO:0003690|GO:0006355
Vivi6g04567 567 SMART mt_12 162 192 IPR003690 GO:0003690|GO:0006355
Vivi6g04567 567 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Vivi6g04567 567 SMART mt_12 491 524 IPR003690 GO:0003690|GO:0006355
Vivi6g04567 567 Pfam mTERF 257 420 IPR003690 GO:0003690|GO:0006355
Vivi6g04567 567 Pfam mTERF 438 541 IPR003690 GO:0003690|GO:0006355
Vivi6g04567 567 PANTHER CGI-12 PROTEIN-RELATED 256 549 IPR003690 GO:0003690|GO:0006355
Vivi6g04567 567 FunFam Transcription termination factor MTEF18, mitochondrial 291 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04567 Vivi-Chr6 147576347 147580725 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi6g04567 mTERF 5.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04567 - - tpra:123891547 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04567 6 147576347 147580725 Vivi6g04567 6 147576347 147580725 ECH