Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04565 ATGGATTCAGAAAACTCTTCTTCAGAAGAGTCCTCTCTAAATGGCTTGAAGTTTGGCCAAAGAATCTATTTTGAGGATTCATCTCTTGCAAACTCCTCTACTGCCAATGCCAATGCTAATGTTTCTTCTTCTAGTGGCTCCAAGAAAGGAAGAGGTGGTTCAGCTCAACACTCTCAACCTCCTAGGTGTCAAGTTGAGGGCTGTAAAGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGACACAAAGTTTGTAGCATGCACTCTAAGTCCCCTACTGTTACTGTTTCTGGTCTCCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTGCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGTCATAATGAGCGTCGCAGAAAGCCCCCACCCAGCTCTCTCTTATCCTCACATTTTACGCGATTTTCTTCATCTGTTTTTGATAACAGCGGCGGAGGTGGCAGTTTCCTGATGGAATTTGCCTCACACCCAAAACTTAGCCTGAGAAATTCACTTCAATCATCTGGAAATCAAACCTCACCACTCGGTTGGTCTTGGCCGGGAAACTCGGAGTCGCCATCTGACAACTTTTTCTTGGAAGGTTCGGTGGGTGGGACAAGCTTCCCTGGTGCCAGGCATCCTTCCGAGGAAAGTTACACCGGAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTAGAAACACAGAACCAAGTCTTGGATTGAATAACATGCTGAATTTCAACGAGACACCACCCATGACACAACTAGCTACATCTTCTCAAGGTGTAGCCATGCATCAACTTCCAAACACTTCCTGTTATTTCAAGGACATTGATGCTAGTAGCCTTTCACACGAGGTTGTTCCCGATCTTGGTCTAGGTCACATGTCGCAGCCTCTCGATAGCCAACTTCACGGCGATCTTGATCTGTCGCAGCAGGGAAGGAGGCATTATATGGATGTAGAGCACTCCAGGGCCTATGAATCTTCTCAATGGTCACTTTAA 1050 0.4562 MDSENSSSEESSLNGLKFGQRIYFEDSSLANSSTANANANVSSSSGSKKGRGGSAQHSQPPRCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPTVTVSGLQQRFCQQCSRFHQLAEFDQGKRSCRRRLAGHNERRRKPPPSSLLSSHFTRFSSSVFDNSGGGGSFLMEFASHPKLSLRNSLQSSGNQTSPLGWSWPGNSESPSDNFFLEGSVGGTSFPGARHPSEESYTGVTDSSCALSLLSNQTWGSRNTEPSLGLNNMLNFNETPPMTQLATSSQGVAMHQLPNTSCYFKDIDASSLSHEVVPDLGLGHMSQPLDSQLHGDLDLSQQGRRHYMDVEHSRAYESSQWSL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04565 349 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Vivi6g04565 349 FunFam Squamosa promoter-binding-like protein 14 54 124 - -
Vivi6g04565 349 MobiDBLite consensus disorder prediction 34 63 - -
Vivi6g04565 349 MobiDBLite consensus disorder prediction 34 61 - -
Vivi6g04565 349 SUPERFAMILY SBT domain 61 142 IPR036893 GO:0003677|GO:0005634
Vivi6g04565 349 Pfam SBP domain 63 136 IPR004333 GO:0003677
Vivi6g04565 349 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 325 IPR044817 GO:0003677
Vivi6g04565 349 MobiDBLite consensus disorder prediction 203 229 - -
Vivi6g04565 349 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04565 Vivi-Chr6 147563123 147566708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04565 16 349 SBP-box Gene Family AT2G42200 43.324 3.25e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi6g04565 SBP 7.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04565 - - mtr:11430800 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04565 6 147563123 147566708 Vivi6g04565 6 147563123 147566708 ECH
Vivi6g04565 6 147563123 147566708 Vivi1g07512 1 194758176 194760175 PCT