Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04564 ATGTTTAGTGGCCTTCTTCCACATCATTTTCAGAACATAAAAAAATTAAGGATTGGTGGGAATAAATTCCATGCAGCGGACAACTATCCCCCATTGACTTCACCTGTGGGGACATTATCAGTTGAGCATAATATTAGTCGCCCGCCCACAACTAATACAAATGCCATCAAGAACTATGCTCCTCCCAAAGTACGTGAGCACAAGCATAAGAAGAAACAATTCGGTCCTGGAGGAATTGCTTTTATTGCTGCTGGAGGAACAATAATGGCTACAGGTGTGGCACTCCTTATTGCAATCCGGTTAAACAAACTGCATTCTCAAAGCCGGAACAAGAATTACTCAGAAAGCAATGATATCTCTATTCATTCTCATCCAACCAGTGCAAGCATAGAGGTGTCTTCTGCTGAACTAGACGACAGGCCACTTCTCCTACCTATCAACATTGCACCTCTTTTGGGTCCAATGAAATTTCCTTCCCTGCACCATAACAATGTAGAGGAAACATCAAGAAGAAGTTATTCCAAAAGAGGCAGATCTACTAGAAGGACAAAAATCTATACCATTGCGGAGCTTCAGCTGGCTACTAACTTCTTCAATGAAGGCAACCTTCTGGGAGAAGGATCTCTTGGTCCTGTTTACAAAGCTAAATTTCCTGATGGCAAAATTTTGGCCGTGAAGATCATAAACATGGCGGGTTTGTCTTACCGAGAAGAGGAAATGTTCTTGGATGTCATTTGCACAGCTTCTAAACTGAAGCACCCCAACATCATACCACTGAATGGTTACTGTTTGGAGCACGGAGAGCATCTTCTTGTTTATGATTACTTTGGAAATTTAACTCTATATGATGCTCTTCATAGTGGAGCATGTGAAACACTATCGTGGATCCAACGTCTTCGGATTGCTCTATATGTTGCTCAGGCTTTGGATTATTTGCACTCAGCGTGCTGCCCGCCTGTGGCCCATGGTAATTTGAAGTCTGCCAATGTTCTACTGGATGAAAATTTGATCCCTCGTGTTGGTGACAGTAGCTTGGCAATTTTGAGACCATTGACGAAGGTTCTAGCAGCTAAAGTAATTGATAAGGCTACTGAGACTACAATTACAGAGAGAGGCTACGCTCCATCTGACCATGGCCAAACAGGGTTCAGCAGAAGGAGAGATGTCTTTGCCTTTGGAGTATTGCTTCTGGAATTGTTAACAGGAAGGAAACCTTTCGACGGTGCCAGGCCAAGGGAAGAGCAATATCTGTCAAAATGGGCTTTCCCCAGGCTTCGTGATAGCGCGAGTTTGGAACAGATAGTAGATTCCAGTATGAAAACAACAATTTCATTCAAAGCTCTTTCTTGTTATGCTGATCTTGTTTCCCTCTGTATACAGCCTTCAAGACACCTCCGTCCCCAAATGTCTGAAGTTGTGAACTCTCTTATATCTTTATACCAAAAGTTCAACTTTGCAAAGACCAGTGTAGCAGACGGTACTGATCTATTTGAGAAGTCTCTCCGATCAGCCGACACACGCTTTAAAAGTTCGCCAACATTTAGCCATCTATCAGCTTGA 1560 0.4288 MFSGLLPHHFQNIKKLRIGGNKFHAADNYPPLTSPVGTLSVEHNISRPPTTNTNAIKNYAPPKVREHKHKKKQFGPGGIAFIAAGGTIMATGVALLIAIRLNKLHSQSRNKNYSESNDISIHSHPTSASIEVSSAELDDRPLLLPINIAPLLGPMKFPSLHHNNVEETSRRSYSKRGRSTRRTKIYTIAELQLATNFFNEGNLLGEGSLGPVYKAKFPDGKILAVKIINMAGLSYREEEMFLDVICTASKLKHPNIIPLNGYCLEHGEHLLVYDYFGNLTLYDALHSGACETLSWIQRLRIALYVAQALDYLHSACCPPVAHGNLKSANVLLDENLIPRVGDSSLAILRPLTKVLAAKVIDKATETTITERGYAPSDHGQTGFSRRRDVFAFGVLLLELLTGRKPFDGARPREEQYLSKWAFPRLRDSASLEQIVDSSMKTTISFKALSCYADLVSLCIQPSRHLRPQMSEVVNSLISLYQKFNFAKTSVADGTDLFEKSLRSADTRFKSSPTFSHLSA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04564 519 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 163 275 - -
Vivi6g04564 519 Gene3D Transferase(Phosphotransferase) domain 1 277 501 - -
Vivi6g04564 519 Pfam Protein tyrosine and serine/threonine kinase 201 476 IPR001245 GO:0004672|GO:0006468
Vivi6g04564 519 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 276 489 - -
Vivi6g04564 519 ProSiteProfiles Protein kinase domain profile. 198 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04564 519 Gene3D Phosphorylase Kinase; domain 1 160 275 - -
Vivi6g04564 519 SUPERFAMILY Protein kinase-like (PK-like) 172 476 IPR011009 -
Vivi6g04564 519 PANTHER OS01G0253100 PROTEIN 118 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04564 Vivi-Chr6 147556369 147559317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04564 2 519 Strubbelig Receptor Gene Family AT5G06820 47.115 2.13e-133 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vivi6g04564 PK_Tyr_Ser-Thr 3.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04564 - - mtr:11428201 748.429