Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04560 ATGAGTCTCAAAAGCAATAGCTGCTTTTCTCTTTTGGTTCCTATTGCTGCAATTTTTGCATCTTTGTATCTCATCAATCCAAATTCACAGTTCTTCACAACTTTGTCACCATCATCTATTTACTTTGGAAGAGGCCATCATCATCATCATAGGCCACACAGAAAACACCCTGACACTGAGAATAATGATTCCATTTGTGATGATTTTCCGCCAGGAATTCCACCTCTAAACACCAATACGACTTCTTATCTTTGCGTCGATCGAAAAGGGTGTTGTAATTTCACAACTGTACAACAAGCTGTTAATGCTGTTCCTGATTTCAGCTTCAAAAGAACTATAATATGGATAAACAGTGGCTTCTACTATGAGAAAGTCATGGTTCCGAAAACAAAACCAAACATTACATTTCAAGGACAAAGCTACACTTCAACTGCAATTGCATGGAATGATACAGCAAAATCTGCTAATGGCACATTTTACAGTGGTTCTGTACAAGTTTTTGCATCTAACTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCACCAATTCCAGCTCCTGGGGCTGATGGAGCACAAGCAGTAGCCATGAGGATATCAGGAGATCAAGCTGAATTCAGAGGCTGCGGATTCTTTGGAGCTCAAGACACCCTTCACGACGATAAGGGTCGTCATTACTTCAAAGACTGCTATATACAAGGATCCATTGATTTCATCTTTGGCAATGCAAGGTCACTCTATGAGAATTGTCAACTAGTTTCGATAGCAAATCCAGTACCTCCAGGACAAAAGAACATAAACGGTGCAGTTACTGCTCATGGTAGAGTTTCAGGAGATGAAAACACAGGATATGTATTTGTGAACAGTACAATAGGAGGAAATGGTAGAATATGGTTAGGTAGGGCATGGAGACCATATTCTCGTGTCATTTTTGCATTGACAGTTATGTCTGATATCATTGCTCCGGAAGGTTGGAATGACTTCAATGACCCTACAAGAGACCAGACTATATTTTATGGAGAGTACAATTGCTCTGGGCCAGGAGCTATTTTGAATACCAGGGCCCCTTATGTACAGAGACTGAATGATTCACAAGCTTTTCCATTCCTTAATACAAGTTTTATTGATGGTGATCTATGGTTGGAAACTTGA 1152 0.3967 MSLKSNSCFSLLVPIAAIFASLYLINPNSQFFTTLSPSSIYFGRGHHHHHRPHRKHPDTENNDSICDDFPPGIPPLNTNTTSYLCVDRKGCCNFTTVQQAVNAVPDFSFKRTIIWINSGFYYEKVMVPKTKPNITFQGQSYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNLAPIPAPGADGAQAVAMRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPPGQKNINGAVTAHGRVSGDENTGYVFVNSTIGGNGRIWLGRAWRPYSRVIFALTVMSDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGAILNTRAPYVQRLNDSQAFPFLNTSFIDGDLWLET 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04560 383 Gene3D - 77 383 IPR012334 -
Vivi6g04560 383 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 72 382 - -
Vivi6g04560 383 ProSitePatterns Pectinesterase signature 2. 232 241 IPR033131 -
Vivi6g04560 383 SUPERFAMILY Pectin lyase-like 83 381 IPR011050 -
Vivi6g04560 383 Pfam Pectinesterase 86 378 IPR000070 GO:0030599|GO:0042545
Vivi6g04560 383 FunFam Pectinesterase 78 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04560 Vivi-Chr6 147531363 147533147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04560 55 382 Carbohydrate Esterase AT1G05310 71.951 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04560 - - gmx:100806629 662.529