LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g04556	ATGGCTTCAAGTGTTGAAAAACCAAACCAAACCACTCCTCAACTAGAACCACTCCCACCATCACAACATCATCAACATCATCATCATCATCAAAATAATCAAATTTCATTTGGAATGATGCAAGCTTCTTCATCAACCTCTCTCCCTGGAAACTTCATAAATAAAGATTCAGCTTATGATTTAGGTGAATTGGATCAAGCACTTTTTCTCTATCTTAATGGACAAACAGACACATCAAGTATTCAAGACCAAAAACAAAATCCAACATCAGGAATGAGGCCACCAACTCTTAACATTTTTCCTTCTGAGCCTATGCATGTAGAGCCATCATCTTCCAACTCAAAGGCTAACATGGAGTTACTTTCTTCGGAAACAAGTGGATCAAGGAAAACCAATCTACCAAAACAAGTCTTCTCTGGCTCTGAACCATCCAAAACTGTCAAGCAGCCAGAGAGAAATCATGGTAAGGGTCCAACTTCAAGTTCTGAACAAGAAGGACCTAAAACACCAGATCCCAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGAAAAAGCAGACTGAGAAAAAAGGCATATATTCAGCAGCTTGAGTCAAGTAGAATTAGGCTTAGTCAGATGGAACAAGAGCTACAGCGTGCTAGAAATCAAGGCATGTTCTTTGGTGGAGGTGCAGTCATGGGAGGAGAGCAAAACATTCCTATCTCAATGAACAGCATTAGCTCAGAGGCCGCGATGTTTGACGTGGAATATGCGAGGTGGATAGAGGAGCACCACCGTATAGTATGCGAACTAAGAGCGGCGGTTCAAGAGCACATTCATGAGGATGAGCTTAGAATGTTTGTGGACAAATTCTTGGCACAATATGATCAACTAATGCATCTTAAGAGCTTACTTGCAAAAGCAGACATATTCCATCTAGTTTCTGGCATGTGGGTGACCCCAGCTGAACGTTGCTTCTTGTGGATTGGTGGATTCAAACCTTCTGAACTCATCAAGATAATTGTGAGTCAAATTGAGCCTGTAACGGAGCAACAAATAATGAGTATATACGGATTGCAACAATCTACACAAGAAGGAGAAGATGCTCTCTCACAAGGACTTGAAGCTTTCAATCAATCTATTTCAGAAACTATATCATCAGAACCATTGAGCTATCCTCCAAATATGAATAACTACATGGAACAATTGGCTAGGGCCATGAACAAACTTTCCACTCTTGAAAGTTTTGCTAGAGAGGCAGATAATCTACGACACCAAACCATTCACCGTCTGAATCAGATCTTAACGACGCGACAAGCAGCGAGATGTTTTGTTGCCATGGCGGAGTACTTCCATCGCATGCGAGCATTGAGTTCTCTCTGGTTGGCACGCCCTCGTCAAGAATAG	1395	0.4179	MASSVEKPNQTTPQLEPLPPSQHHQHHHHHQNNQISFGMMQASSSTSLPGNFINKDSAYDLGELDQALFLYLNGQTDTSSIQDQKQNPTSGMRPPTLNIFPSEPMHVEPSSSNSKANMELLSSETSGSRKTNLPKQVFSGSEPSKTVKQPERNHGKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIRLSQMEQELQRARNQGMFFGGGAVMGGEQNIPISMNSISSEAAMFDVEYARWIEEHHRIVCELRAAVQEHIHEDELRMFVDKFLAQYDQLMHLKSLLAKADIFHLVSGMWVTPAERCFLWIGGFKPSELIKIIVSQIEPVTEQQIMSIYGLQQSTQEGEDALSQGLEAFNQSISETISSEPLSYPPNMNNYMEQLARAMNKLSTLESFAREADNLRHQTIHRLNQILTTRQAARCFVAMAEYFHRMRALSSLWLARPRQE	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g04556	464	Pfam	bZIP transcription factor	173	208	IPR004827	GO:0003700\|GO:0006355
	Vivi6g04556	464	MobiDBLite	consensus disorder prediction	79	175	-	-
	Vivi6g04556	464	PANTHER	TRANSCRIPTION FACTOR TGA9	86	463	-	-
	Vivi6g04556	464	MobiDBLite	consensus disorder prediction	105	146	-	-
	Vivi6g04556	464	MobiDBLite	consensus disorder prediction	1	32	-	-
	Vivi6g04556	464	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	171	215	IPR004827	GO:0003700\|GO:0006355
	Vivi6g04556	464	Gene3D	-	172	221	-	-
	Vivi6g04556	464	MobiDBLite	consensus disorder prediction	79	96	-	-
	Vivi6g04556	464	MobiDBLite	consensus disorder prediction	1	19	-	-
	Vivi6g04556	464	CDD	bZIP_HBP1b-like	173	225	-	-
	Vivi6g04556	464	FunFam	BZIP family transcription factor	172	221	-	-
	Vivi6g04556	464	SUPERFAMILY	Leucine zipper domain	174	217	IPR046347	GO:0003700\|GO:0006355
	Vivi6g04556	464	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	176	191	IPR004827	GO:0003700\|GO:0006355
	Vivi6g04556	464	Pfam	Seed dormancy control	264	339	IPR025422	GO:0006351\|GO:0043565
	Vivi6g04556	464	Coils	Coil	192	219	-	-
	Vivi6g04556	464	ProSiteProfiles	DOG1 domain profile.	246	460	IPR025422	GO:0006351\|GO:0043565
	Vivi6g04556	464	MobiDBLite	consensus disorder prediction	153	168	-	-
	Vivi6g04556	464	SMART	brlzneu	169	255	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g04556	Vivi-Chr6	147500758	147505286	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g04556	50	464	Basic region leucine zipper (bZIP) Transcription Factor Gene Family	AT5G06839	57.859	1.28e-174	496

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vivi6g04556		DOG1	7.3e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g04556	K14431		-	gmx:100799713	662.529