Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04555 ATGGCTTCAAGTGTTGAAAAACCAAACCAAACCACTCCTCAACTAGAACCACTCCCACCATCACAACATCATCAACATCATCATCATCATCAAAATAATCAAATTTCATTTGGAATGATGCAAGCTTCTTCATCAACCTCTCTCCCTGGAAACTTCATAAATAAAGATTCAGCTTATGATTTAGGTGAATTGGATCAAGCACTTTTTCTCTATCTTAATGGACAAACAGACACATCAAGTATTCAAGACCAAAAACAAAATCCAACATCAGGAATGAGGCCACCAACTCTTAACATTTTTCCTTCTGAGCCTATGCATGTAGAGCCATCATCTTCCAACTCAAAGGCTAACATGGAGTTACTTTCTTCGGAAACAAGTGGATCAAGGAAAACCAATCTACCAAAACAAGTCTTCTCTGGCTCTGAACCATCCAAAACTGTCAAGCCAGAGAGAAATCATGGTAAGGGTCCAACTTCAAGTTCTGAACAAGAAGGACCTAAAACACCAGATCCCAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGAAAAAGCAGACTGAGAAAAAAGGCATATATTCAGCAGCTTGAGTCAAGTAGAATTAGGCTTAGTCAGATGGAACAAGAGCTACAGCGTGCTAGAAATCAAGGCATGTTCTTTGGTGGAGGTGCAGTCATGGGAGGAGAGCAAAACATTCCTATCTCAATGAACAGCATTAGCTCAGAGGCCGCGATGTTTGACGTGGAATATGCGAGGTGGATAGAGGAGCACCACCGTATAGTATGCGAACTAAGAGCGGCGGTTCAAGAGCACATTCATGAGGATGAGCTTAGAATGTTTGTGGACAAATTCTTGGCACAATATGATCAACTAATGCATCTTAAGAGCTTACTTGCAAAAGCAGACATATTCCATCTAGTTTCTGGCATGTGGGTGACCCCAGCTGAACGTTGCTTCTTGTGGATTGGTGGATTCAAACCTTCTGAACTCATCAAGATAATTGTGAGTCAAATTGAGCCTGTAACGGAGCAACAAATAATGAGTATATACGGATTGCAACAATCTACACAAGAAGGAGAAGATGCTCTCTCACAAGGACTTGAAGCTTTCAATCAATCTATTTCAGAAACTATATCATCAGAACCATTGAGCTATCCTCCAAATATGAATAACTACATGGAACAATTGGCTAGGGCCATGAACAAACTTTCCACTCTTGAAAGTTTTGCTAGAGAGGCAGATAATCTACGACACCAAACCATTCACCGTCTGAATCAGATCTTAACGACGCGACAAGCAGCGAGATGTTTTGTTGCCATGGCGGAGTACTTCCATCGCATGCGAGCATTGAGTTCTCTCTGGTTGGCACGCCCTCGTCAAGAATAG 1392 0.4174 MASSVEKPNQTTPQLEPLPPSQHHQHHHHHQNNQISFGMMQASSSTSLPGNFINKDSAYDLGELDQALFLYLNGQTDTSSIQDQKQNPTSGMRPPTLNIFPSEPMHVEPSSSNSKANMELLSSETSGSRKTNLPKQVFSGSEPSKTVKPERNHGKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIRLSQMEQELQRARNQGMFFGGGAVMGGEQNIPISMNSISSEAAMFDVEYARWIEEHHRIVCELRAAVQEHIHEDELRMFVDKFLAQYDQLMHLKSLLAKADIFHLVSGMWVTPAERCFLWIGGFKPSELIKIIVSQIEPVTEQQIMSIYGLQQSTQEGEDALSQGLEAFNQSISETISSEPLSYPPNMNNYMEQLARAMNKLSTLESFAREADNLRHQTIHRLNQILTTRQAARCFVAMAEYFHRMRALSSLWLARPRQE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04555 463 ProSiteProfiles DOG1 domain profile. 245 459 IPR025422 GO:0006351|GO:0043565
Vivi6g04555 463 Gene3D - 171 220 - -
Vivi6g04555 463 FunFam BZIP family transcription factor 171 220 - -
Vivi6g04555 463 SUPERFAMILY Leucine zipper domain 173 216 IPR046347 GO:0003700|GO:0006355
Vivi6g04555 463 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 175 190 IPR004827 GO:0003700|GO:0006355
Vivi6g04555 463 Pfam bZIP transcription factor 172 207 IPR004827 GO:0003700|GO:0006355
Vivi6g04555 463 MobiDBLite consensus disorder prediction 1 32 - -
Vivi6g04555 463 MobiDBLite consensus disorder prediction 105 145 - -
Vivi6g04555 463 PANTHER TRANSCRIPTION FACTOR TGA9 85 462 - -
Vivi6g04555 463 MobiDBLite consensus disorder prediction 79 96 - -
Vivi6g04555 463 MobiDBLite consensus disorder prediction 1 19 - -
Vivi6g04555 463 Coils Coil 191 218 - -
Vivi6g04555 463 MobiDBLite consensus disorder prediction 79 174 - -
Vivi6g04555 463 Pfam Seed dormancy control 263 338 IPR025422 GO:0006351|GO:0043565
Vivi6g04555 463 SMART brlzneu 168 254 IPR004827 GO:0003700|GO:0006355
Vivi6g04555 463 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 170 214 IPR004827 GO:0003700|GO:0006355
Vivi6g04555 463 CDD bZIP_HBP1b-like 172 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04555 Vivi-Chr6 147500758 147505286 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04555 50 463 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 58.957 1.66e-175 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi6g04555 DOG1 7.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04555 K14431 - gmx:100799713 665.611