Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04540 ATGCCTCGCAATATCTATGTCAAAGGCTCATTAGATGTTTTGCATCTTGTAAGCTTTGAACTCCAAGTGAAAAAACTAAAACCTCTCTCCCAAAATTTATCCATGCCTTTCTTCTACATCTTTTTCTTTCTAGCTTTGCTAATCTTCTTCACTTCACTTATTAAAAACATACAAACCACAAAAGAAAACTCCAAATTTAACCCTCCACCAAGCCCACCATCGTTACCTATCATAGGCCATCTTCACCTTATAGGCTCAATCATACCAAAATCATTCCAAAAACTTTCTCACCACTATGGCCCTTTACTTCATCTCAAACTAGGTGCCTCAACTTCTATACTTGTCTCCAATGCACAAGTTGCCAAACAAGTCATGAAAAACCATGACCTTAACTTTTGTTACCGACCTCAATTTGGATCCTCTCATGATTTTTTATACAAAGGGTCATATTTCATCACTGCTCCATATGGTCCTTATTGGAGATTCATGAAAAAACTATGTGTTACTAAATTACTCTCTAGTTCACAACTTGATCGTTTCTTGCATATTAGAGAGCAAGAATTAGAGAGCCTCTTGAAATCTTTTGTGGTGTGTTGTAATGAAAATAGGTCAACGGATTTGTGTTTGGATTTCACTAGTTTTACTAATAATATTTTGTGTCGTATGGCAATGGGAACCACTTGCTTTGACAAAGATGTTATTAGATGTTTGGTTAGGGAGTTTATGCATGTAGGAGCTAAATTGAGTATGGGTGAAGTGTTTGGGCCTTTGGGGATATTGGATTTGTTTGGGTATGGGAAAAAGCTTAGGAGGATAGTGGGTGAATTTGATCATATTTTGGAAGATTTCTTGAAGGAACATGAAGAGAGAAATAGTGAGGATTGTCAAGGAGACATGATGGATGTTTTATTAGAAGTGTATAGAAATCCAAATGCTGAAGTGAGGTTAACAAGAAATGATATCAAAGCCTTCTTCTTGGACATTTTCTTGGCTGGAACAGACACATCTTCAGTGGCAATGCAATGGGCCATGGCAGAGATAATAAACAACCCAAAAATACTGAAGAAATTAAGGGCTGAGATTAAGTCTGTAGTGGGACCTACAAGATTAGTCAGAGAATCCGACATTCCAAAACTGCCTTACCTACAAGCTTGTGTGAAGGAAGTACTAAGACTTCATCCATCTGCACCGTTCGCTCTTAGACAATCATCAGAGGATTGCAAAATCAACGGCTATGATATAAAAGCACAAACTAGAACATTGATTAATGTGTATGCCATTATGAGGGACCCACAATCATGGGTTAATCCTGAGGAGTATATACCTGAAAGATTCTTAGATAGTGGAGATGAGATCAACGGTGGAGATGGATATGTGAATAAAATGGACGGTGGTGATGATTTTAGGTATATTCCATTTGGGTTTGGTAGGAGGGGTTGTCCTGGATCTTCACTTGCTTTAAAGGTTATAGAAGTTACGGTTGCTGCATTGGTGCAATGTTTTGAGTGGAAAATTAAAGGTGGTGGTAAAGTTGATTTGGAAGAAGGTTCTTCTTTTTCTGTGGGATTAGCAAAACCGTTGGTTTGTTACCCTGTTACTTGTTTTAATCCTTTTGAAGTTTGTGATTAG 1629 0.3763 MPRNIYVKGSLDVLHLVSFELQVKKLKPLSQNLSMPFFYIFFFLALLIFFTSLIKNIQTTKENSKFNPPPSPPSLPIIGHLHLIGSIIPKSFQKLSHHYGPLLHLKLGASTSILVSNAQVAKQVMKNHDLNFCYRPQFGSSHDFLYKGSYFITAPYGPYWRFMKKLCVTKLLSSSQLDRFLHIREQELESLLKSFVVCCNENRSTDLCLDFTSFTNNILCRMAMGTTCFDKDVIRCLVREFMHVGAKLSMGEVFGPLGILDLFGYGKKLRRIVGEFDHILEDFLKEHEERNSEDCQGDMMDVLLEVYRNPNAEVRLTRNDIKAFFLDIFLAGTDTSSVAMQWAMAEIINNPKILKKLRAEIKSVVGPTRLVRESDIPKLPYLQACVKEVLRLHPSAPFALRQSSEDCKINGYDIKAQTRTLINVYAIMRDPQSWVNPEEYIPERFLDSGDEINGGDGYVNKMDGGDDFRYIPFGFGRRGCPGSSLALKVIEVTVAALVQCFEWKIKGGGKVDLEEGSSFSVGLAKPLVCYPVTCFNPFEVCD 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04540 542 Gene3D Cytochrome P450 53 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 CDD CYP93 100 531 - -
Vivi6g04540 542 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 42 521 - -
Vivi6g04540 542 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 473 482 IPR017972 GO:0005506|GO:0016705
Vivi6g04540 542 SUPERFAMILY Cytochrome P450 64 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS P450 superfamily signature 480 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS P450 superfamily signature 471 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS E-class P450 group I signature 120 141 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS E-class P450 group I signature 96 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS E-class P450 group I signature 470 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS E-class P450 group I signature 214 232 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS E-class P450 group I signature 480 503 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 Pfam Cytochrome P450 69 520 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi6g04540 542 FunFam Cytochrome P450 family protein 60 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04540 Vivi-Chr6 147273202 147276677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04540 25 538 Cytochrome P450 AT2G42250 49.423 3.85e-179 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04540 - - vvo:131614943 1060.06