Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04538 ATGGATTTGAATTCTGGTTATCAAGAACTCCAACAAAACCAAAGGTTGCTTCGTTTCCGCTCTACAAGTTCTTCCGGTGCAAGTTCAAGCATGCTTGTTGGTTCTTCTATGGGAAGGGGAATGGATCAACCAAGTAGTTCTTCTGCTGCTCATTTCTCCAATAACATCATCTCCTTTCAAAATGGTTACGAAACTACGAAAGGTGTTGAAAACTATGATGGAGTGAATGAAAGTGATGGTGAACTTACTCTATCTATGAGCATATTGAAGAATCATATCGGATTCTCACCAAGCTCTTCTTCCTTGGGAACATTATCACAGAACTCCAAAATGGGGAGTGATGGTCATAAATTCTTTTATGATTATAATCATCAGAATGTAGAGGTAGGAAATCAAGTAAATACATTATCACATCACATGAGTTTGCCAAGAAAATCATCAGAAATGTTTGTTATGGAGAATTTACATCAGTTCCCAGATTCTTCTGTTCCTAGCAGTATTAGAGCAAAGCGAGGCTGCGCAACGCATCCCAGAAGCGTCGCAGAAAGGGTAAGAAGAACTCGAATAAGCGAGCGAATGAAAAAGTTGCAAGAGCTTGTTCCAAACATTGACAAGCAAACTTGCACATCAGAAATGTTGGATTTGGCTGCAGAGTACATTAAAGATCTTCAAAAACAATTAAAGATTATGAGTGCAAAAAGAGCTAAATGCAGATGCAAAAATCAGAAATGA 732 0.3825 MDLNSGYQELQQNQRLLRFRSTSSSGASSSMLVGSSMGRGMDQPSSSSAAHFSNNIISFQNGYETTKGVENYDGVNESDGELTLSMSILKNHIGFSPSSSSLGTLSQNSKMGSDGHKFFYDYNHQNVEVGNQVNTLSHHMSLPRKSSEMFVMENLHQFPDSSVPSSIRAKRGCATHPRSVAERVRRTRISERMKKLQELVPNIDKQTCTSEMLDLAAEYIKDLQKQLKIMSAKRAKCRCKNQK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04538 243 Gene3D - 174 243 IPR036638 GO:0046983
Vivi6g04538 243 Pfam Helix-loop-helix DNA-binding domain 179 224 IPR011598 GO:0046983
Vivi6g04538 243 Coils Coil 220 240 - -
Vivi6g04538 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 240 IPR036638 GO:0046983
Vivi6g04538 243 FunFam Transcription factor bHLH130 family 174 242 - -
Vivi6g04538 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 223 IPR011598 GO:0046983
Vivi6g04538 243 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 238 - -
Vivi6g04538 243 SMART finulus 179 229 IPR011598 GO:0046983
Vivi6g04538 243 MobiDBLite consensus disorder prediction 18 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04538 Vivi-Chr6 147241749 147245074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04538 45 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.327 5.24e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g04538 HLH 4.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04538 - - psat:127126267 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04538 6 147241749 147245074 Vivi6g04538 6 147241749 147245074 ECH
Vivi6g04538 6 147241749 147245074 Vivi1g07562 1 198970092 198972993 PCT