Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04535 ATGGAACAAACTACATTAGGATTGAATGGATCCATTCACCTCGATTCCGTTCAATTTAACGATGAAATTCACGGAATTATGGTTCCGGCGCCGGCACCGGAAAACGCAAGCTCATTCACCGCTCTACTGGAGCTTCCGCCGACGCAGGCCGTAGAGCTTCTTCACTTACCGGATTGCGACGGAACTGACTCCCGGAGTCTGCCTTGCTGCCACGTCAGCGTGAATCAGAAACCCTATCTTCCGAGCTCCTCCGACGGTAATTTGACCTTCCCTGTCAACGCTGCTTTGATTGAACGTGCCGCGAAATTCTCCGTGTTCGCCAGAGATATTTCTACCGGAGAGACGCGGTTGTTTCCGGCAGTTTCTGGACCGAATTTGGAAAGTGTGAAGAATGAACCACAAGAGACCGATTCAAACCCTTGCTCGACGCAAGAGTGCGTTTCTGATCCAGCTGTTGAAAACAAGAATCAGAGAACCGCCAAGAGAAAGGAGCGAGAGAAGAAGGGTAAAGCATGCTCGAAGAAGAGCAAGAGCATCGCCGATGATACCTCCGGTGACGGTGAGAAGCTTCCTTACGTCCATGTTCGCGTTCGACGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAGCGAGCTAGGAGAGAGAAGATTAATGCACGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCTGGAACGGCATTGGTTCTTGATGAAATCATCAACCATGTGCAAACTCTACAACGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAACTTAGACAGGTTATTGGCTACTGATGGGCCATCTTTAATGGACAGCATGTTACCTAGCATGGCTACGCCTCTTGTGTGGCCAGAAATCCCACTCAACAGTAACAGACAACATTATCAACAGCAGTGGCAAGTTGATGATGCATTCCATCAACCACTTTGGGGAAGGGAAGAAGACAACCATAATTTCATGACTCAGGAAAACTCACTTTTGAGTTATGACTCCTCTGCAAACTCAGCATCTCTACACTCAAATCAATTGAAGATGGAGCTCTGA 1089 0.4793 MEQTTLGLNGSIHLDSVQFNDEIHGIMVPAPAPENASSFTALLELPPTQAVELLHLPDCDGTDSRSLPCCHVSVNQKPYLPSSSDGNLTFPVNAALIERAAKFSVFARDISTGETRLFPAVSGPNLESVKNEPQETDSNPCSTQECVSDPAVENKNQRTAKRKEREKKGKACSKKSKSIADDTSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQTLQRQVEILSMKLAAVNPRIDFNLDRLLATDGPSLMDSMLPSMATPLVWPEIPLNSNRQHYQQQWQVDDAFHQPLWGREEDNHNFMTQENSLLSYDSSANSASLHSNQLKMEL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04535 362 MobiDBLite consensus disorder prediction 127 154 - -
Vivi6g04535 362 MobiDBLite consensus disorder prediction 117 187 - -
Vivi6g04535 362 Pfam Helix-loop-helix DNA-binding domain 205 252 IPR011598 GO:0046983
Vivi6g04535 362 FunFam transcription factor bHLH48-like isoform X1 198 270 - -
Vivi6g04535 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 270 IPR036638 GO:0046983
Vivi6g04535 362 Gene3D - 198 271 IPR036638 GO:0046983
Vivi6g04535 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 251 IPR011598 GO:0046983
Vivi6g04535 362 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 137 346 IPR024097 GO:0006355
Vivi6g04535 362 CDD bHLH_AtBPE_like 191 276 - -
Vivi6g04535 362 MobiDBLite consensus disorder prediction 171 187 - -
Vivi6g04535 362 Coils Coil 241 261 - -
Vivi6g04535 362 SMART finulus 207 257 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04535 Vivi-Chr6 147152700 147157248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04535 12 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.034 1.39e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g04535 HLH 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04535 - - vun:114168708 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04535 6 147152700 147157248 Vivi6g04535 6 147152700 147157248 ECH