Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04525 ATGTCTTCACTTTCACTCTGTACATTCCTCTTCCTCCTTTCTCTAACCTTCTCAATCTTCACCTTCACTTCATCTTCATCAGAAGCTGAAACCCTTCTCTCCTTCAAATCCACCATCCAAGACACCAAAAACACATTATCAACATGGTCCAACACTTCCCTAAACCACTTCTGCAACTGGACTGGAATCTCCTGTTCTTCTACTTCACCATTTTCAGTAACCTCTGTCAACCTCCAAAACCTAAACCTCTCCGGTGATATCTCATCTTCCATATGTAACCTCCCAAATCTCTCTGATCTCAACCTTGCTAACAATGCCTTTAACCAACCTATCCCTCTTCATCTCTCTCAATGTAGTTCATTGAAAAGCTTGAATCTTAGTAATAATCTCATCTGGGGTACTATCCCTTCTCAGATTTCGATGTTTGTTGCTTTGTCAGTGCTTGATTTGAGTAGAAACCGTATAGAGGGAAACATTCCTGATGGTTTTGGTTCGTTGAAGAATCTTCAAATGCTTGATATGAATACTAACTTGCTTTCTGGGGATGTGCCTAAGGTGTTTGGTAATATGACTAAGCTGGAAGTTCTTGATTTGTCTTTGAATCCTTACTTGGTGAGTGAGATTCCTGAGGATATAGGTGAGCTTGGGAGTTTAAAGCAACTTCTTTTACAGAGTTCGGGTTTTCAAGGTGAAATTCCTGAGTCTTTGAAGGGTTTGGTTAGTTTAACTCATTTGGATCTCTCTGAGAATAATCTAACTGGTGAGGTTCCTAAGACCCTTGTGTCTTCTCTTAAGAATATTGTTTCTTTTGATGTTTCACAGAACAAGCTTTTGGGTTTGTTTCCGGAGGGTTTATGTAAAGGAGGAAAAGGGCTTATAAATTTAAGTCTTCATACAAATGGGTTTACTGGGTTGATACCAAATTCAACTAGTGAATGTAAGAGTCTTGAGAGGTTTCAAGTTCAGAACAATGGGTTCTCTGGTGATTTTCCTGTTGGGTTGTTTTCACTTCCTAGAATTAAGCTCATTAGAGGTGAGAACAATAGATTTACAGGACAAATACCTGAGTTAATCTCGGAAGCTTCTCAGTTAGAGCAAGTTCAGCTTGATAATAACCTTTTTGATGGTGAAATTCCTTCGGGTGTTGGGTTAGTTAAGAGTTTATACAGATTTTCTGCTTCTTTAAATCATTTCTATGGTGAAATTCCTCCTAGTTTTTGTGATTCACCAGTTATGAGTATCATGAATCTCTCTCACAATTCTCTTTCTGGTCATATCCCTCAGCTGAAAAAATGCAGGAAGTTAGTTTCACTCTCTTTAGCTGATAACAGTTTAACAGGAGAAATTCCTAATTCTCTAGCTGAACTACCTGTGCTTACTTATCTTGATCTCTCACATAACAATCTTACTGGTTCAATTCCACAAGGTCTTCAAAACTTGAAGCTTGCACTTTTCAATGTTTCCTATAATCAGTTATCCGGTAAAGTACCGTTCTCGTTGATTTCCGGTCTTCCTGCATCATTTTTGGAAGGAAATTCTGGTCTTTGTGGTCCTGGATTGCCAAATTCATGTTCTGATGATGACAAGCCAAGACACCATGTTGCTTCTGGTTTTACAACCTTGGTATGTGCTTTGATCTCTCTAGCATTTGTTGCTGGAATTTCTCTTGTTGCTGGTGGATTTATATTGTGTAGGAGATCTAGCAAAGGGAATGGAGATTTTGTATGGCGCTCAGTGTTCTTCTATCCTCTCAGAATTACTGAGCATGATCTTCTTATAGGGATGAATGACAAAAGCTCAATAGGAAATGGAATTTTCGGTAATGTTTATGTTGTGAGCTTACCTAGTGGTGATTTAGTATCTGTGAAGAAGCTGGTTAAATTAGGAAACCAGTCTTCGAAGAGTTTAAAAGTTGAAGTTAAAACTTTAGCTAAAATTAGGCACAAGAATGTTGTTAAGATTCTTGGATTCTGTCATTCTGATGAGTCGATTTTTCTCATTTATGAATACTTGAATGGTGGAAGCTTAGGGGACTTGATTTGTAGTCAGAATTTTCAGCTGCATTGGGGAATTCGATTGAAGATTGCTATCGGAGTTGCTCAAGGACTTGCATATCTTCACAAGGATTATGTTCCACACTTGGTTCATAGAAATGTCAAGTCAAAGAACATTCTGTTGGATGTTAACTTTGAGCCAAAACTTACACATTTTGCTCTTGATAGGATTGTTGGAGAAGCTGCATTTCAATCCATTTTGGATTCTGAAGCTACATCTTCATGTTACATTGCTCCAGAATATGGATACAATAAAAAAGCAAGTGAACAATTGGATGTGTACAGCTTTGGTGTTGTATTGCTAGAGCTAATTTGTGGAAGACAAGCTGAGAAAACAGATTCAAGTGATGACTCTTCACTTGACATAGTGAAATGGGTTAGAAGGAAAGTGAACATTACTAATGGGGTGAACCAAGTTCTTGACACTAGAATATCACATTCTTGTCACCAAGAAATGATTGGTGCTTTAGATATTGCTCTAAACTGCACTTCTGTTGTACCTGAGAAAAGGCCATCAATGTTAGAAGTTGTTAGAGGTCTTCAGTCTCTTGAGTCAAGGACTTGTATTGCAAATTTGCAGGGTCCAAATGTTGAACCCTCTATTCCAGTATGA 2667 0.381 MSSLSLCTFLFLLSLTFSIFTFTSSSSEAETLLSFKSTIQDTKNTLSTWSNTSLNHFCNWTGISCSSTSPFSVTSVNLQNLNLSGDISSSICNLPNLSDLNLANNAFNQPIPLHLSQCSSLKSLNLSNNLIWGTIPSQISMFVALSVLDLSRNRIEGNIPDGFGSLKNLQMLDMNTNLLSGDVPKVFGNMTKLEVLDLSLNPYLVSEIPEDIGELGSLKQLLLQSSGFQGEIPESLKGLVSLTHLDLSENNLTGEVPKTLVSSLKNIVSFDVSQNKLLGLFPEGLCKGGKGLINLSLHTNGFTGLIPNSTSECKSLERFQVQNNGFSGDFPVGLFSLPRIKLIRGENNRFTGQIPELISEASQLEQVQLDNNLFDGEIPSGVGLVKSLYRFSASLNHFYGEIPPSFCDSPVMSIMNLSHNSLSGHIPQLKKCRKLVSLSLADNSLTGEIPNSLAELPVLTYLDLSHNNLTGSIPQGLQNLKLALFNVSYNQLSGKVPFSLISGLPASFLEGNSGLCGPGLPNSCSDDDKPRHHVASGFTTLVCALISLAFVAGISLVAGGFILCRRSSKGNGDFVWRSVFFYPLRITEHDLLIGMNDKSSIGNGIFGNVYVVSLPSGDLVSVKKLVKLGNQSSKSLKVEVKTLAKIRHKNVVKILGFCHSDESIFLIYEYLNGGSLGDLICSQNFQLHWGIRLKIAIGVAQGLAYLHKDYVPHLVHRNVKSKNILLDVNFEPKLTHFALDRIVGEAAFQSILDSEATSSCYIAPEYGYNKKASEQLDVYSFGVVLLELICGRQAEKTDSSDDSSLDIVKWVRRKVNITNGVNQVLDTRISHSCHQEMIGALDIALNCTSVVPEKRPSMLEVVRGLQSLESRTCIANLQGPNVEPSIPV 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04525 888 Pfam Protein kinase domain 597 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04525 888 Gene3D Ribonuclease Inhibitor 288 408 IPR032675 -
Vivi6g04525 888 ProSitePatterns Protein kinases ATP-binding region signature. 601 624 IPR017441 GO:0005524
Vivi6g04525 888 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 671 873 - -
Vivi6g04525 888 PRINTS Leucine-rich repeat signature 456 469 - -
Vivi6g04525 888 PRINTS Leucine-rich repeat signature 242 255 - -
Vivi6g04525 888 Gene3D Ribonuclease Inhibitor 411 522 IPR032675 -
Vivi6g04525 888 SMART LRR_typ_2 94 118 IPR003591 -
Vivi6g04525 888 SMART LRR_typ_2 142 165 IPR003591 -
Vivi6g04525 888 SMART LRR_typ_2 239 263 IPR003591 -
Vivi6g04525 888 SMART LRR_typ_2 190 215 IPR003591 -
Vivi6g04525 888 SMART LRR_typ_2 166 189 IPR003591 -
Vivi6g04525 888 SMART LRR_typ_2 456 479 IPR003591 -
Vivi6g04525 888 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 586 670 - -
Vivi6g04525 888 ProSiteProfiles Leucine-rich repeat profile. 458 481 IPR001611 GO:0005515
Vivi6g04525 888 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Vivi6g04525 888 Gene3D Ribonuclease Inhibitor 184 287 IPR032675 -
Vivi6g04525 888 FunFam Leucine-rich repeat family protein 27 184 - -
Vivi6g04525 888 SUPERFAMILY L domain-like 206 519 - -
Vivi6g04525 888 SUPERFAMILY Protein kinase-like (PK-like) 598 864 IPR011009 -
Vivi6g04525 888 SUPERFAMILY L domain-like 26 287 - -
Vivi6g04525 888 Gene3D Phosphorylase Kinase; domain 1 590 670 - -
Vivi6g04525 888 ProSiteProfiles Protein kinase domain profile. 595 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04525 888 Pfam Leucine rich repeat 433 492 IPR001611 GO:0005515
Vivi6g04525 888 Pfam Leucine rich repeat 145 201 IPR001611 GO:0005515
Vivi6g04525 888 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vivi6g04525 888 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 867 - -
Vivi6g04525 888 Gene3D Transferase(Phosphotransferase) domain 1 671 878 - -
Vivi6g04525 888 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 263 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04525 Vivi-Chr6 147059034 147062130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04525 28 868 Receptor kinase-like Gene Family AT5G06940 60.947 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g04525 Pkinase 4.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04525 - - gmx:100794428 1361.67