Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04520 ATGGAGATAGAGAAGAGTGAGATGAAGTCAAAGAAGATGGAAGAGTATGAAGTGATAGAACAAATTGGTAGAGGAGCGTTTGGTTCTGCTTTTCTTGTTCTTCATAAGTCCGAGAAAAAGCGGTATGTGCTGAAAAAGATTCGTTTGGCCAAACAGGGAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAATCTGATTGCAAAACTGAATAACCCATACATTGTGGATTACAAAGATGCTTGGGTGGAAAAGGAGGACCATGTATGCATTATAACCGGCTATTGCGAAGGAGGCGACATGGCCGAGAGCATTAAGAAAGCTCGAGGATCGTTTTTTCCAGAGGAGAAGGTCTGCAAGTGGCTAACTCAACTGTTGGTAGCCGTAGACTACTTGCATTCTAACCGTGTAATCCATCGGGATCTTAAGTGTTCCAACATATTCCTCACCAAGGACAACAATATTCGGCTAGGTGATTTTGGTCTTGCAAAGCGACTTAATGGAGAAGACCTCGCTTCCTCGGTCGTTGGAACTCCAAATTACATGTGTCCTGAACTCCTCGCGGACATACCATACGGTTATAAATCGGATATATGGTCTCTCGGTTGCTGCATGTTTGAGATTGCTGCACATCAATCAGCATTTCGTGCTCCGGACATGGCTGGACTTATCAATAAAATAAATCGATCCTCCATTTCTCCGCTGCCAATTGTTTATTCTTCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGACCAACAGCTGCGGAATTGTTAAGACATCCACATTTACAACCATATGTTCTTCGGTGTCATAATGCATCATCTAATGTTCTTCCAGTATATCCCCTAGTTAACTCGAAGGATAAAACAAAAAGATCTCCCAAAGCTAGTGGCGGCAAGGGCCATAACGACAGAGAAACGGGATTCGTAAATCGTTTGGAACGTGTTCATCCAATTGGGGGAAATGTTGATGTACATACAACTTATCGTCCTAACAATGCCGAGGTAACAATCTCAACGAGCACAGAATACAACCTCGAGACCAAGATGATTGATCATACGATTACGGGCTACATAGTTGAATCTTCTACTAGTATTAGCGGCTCAAAAGATGGATCAACAACTTCTGAATCAACAACTTGCAGTGTGTGCAAGGAGGACTATAAAATTAGACCAGCAAGGGAAATAGCTACCAATGGAATCACCTCAAAGCGCATACACGATTCTCTGCACGAGAAAGAACACAGATTTGCTGTAGCGACTACTGAAGTCGAAGGTACCTTCTTGAACAAAGGCTTTGATAATGTTAAAGCACAGAGGGAAGATGCCAAATTTGATGACCTTAGGAAATCAACGACTTCCAGTGCAACCAATAGCAGTACTGACAAAAATAATTCCATTAACGAGGAAAGTTCATTGCTAATTATGCATCCTCTAAGGGTTGAACACAACAGTACTGAATCCAGAGACTACTCAAAGAAAAATGAAAACCATGATTCTTTTACCGAAAAAGTCTTACATACGAACTGCTCGTCGTCAGAGAGTAACAATCATAGCAATATACTTGCAGTTAAGGAGGATGGCATCGAAAAACTTCACATTATTTGCCCCACACAGAAAGAAGATGATAATGCAACAAATGGTGGTGATGACGGAGACAAAGCAATCGACGATGCGTTGTCGGATAGTCCATGCCAGGAAAGAGCCGATGCATTGGAGTCTCTCCTTGAGTTATGTGCTCAGTTACTTAAACAAGACAAACTCGAAGAACTTGCTGGTGTTCTAAGACCATTTGGGAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGTTGACAAAGAGCCTCATATCTGCTCAAAAGTTTAACCCTGAAAACTAG 1902 0.4175 MEIEKSEMKSKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQGEKFKRTAHQEMNLIAKLNNPYIVDYKDAWVEKEDHVCIITGYCEGGDMAESIKKARGSFFPEEKVCKWLTQLLVAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNGEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQSAFRAPDMAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCHNASSNVLPVYPLVNSKDKTKRSPKASGGKGHNDRETGFVNRLERVHPIGGNVDVHTTYRPNNAEVTISTSTEYNLETKMIDHTITGYIVESSTSISGSKDGSTTSESTTCSVCKEDYKIRPAREIATNGITSKRIHDSLHEKEHRFAVATTEVEGTFLNKGFDNVKAQREDAKFDDLRKSTTSSATNSSTDKNNSINEESSLLIMHPLRVEHNSTESRDYSKKNENHDSFTEKVLHTNCSSSESNNHSNILAVKEDGIEKLHIICPTQKEDDNATNGGDDGDKAIDDALSDSPCQERADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLISAQKFNPEN 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04520 633 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Vivi6g04520 633 FunFam Serine/threonine-protein kinase Nek6 1 95 - -
Vivi6g04520 633 Gene3D Transferase(Phosphotransferase) domain 1 96 284 - -
Vivi6g04520 633 MobiDBLite consensus disorder prediction 293 314 - -
Vivi6g04520 633 CDD STKc_Nek 16 270 - -
Vivi6g04520 633 MobiDBLite consensus disorder prediction 546 567 - -
Vivi6g04520 633 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 524 - -
Vivi6g04520 633 MobiDBLite consensus disorder prediction 451 477 - -
Vivi6g04520 633 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04520 633 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Vivi6g04520 633 MobiDBLite consensus disorder prediction 457 477 - -
Vivi6g04520 633 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04520 633 SUPERFAMILY Protein kinase-like (PK-like) 13 302 IPR011009 -
Vivi6g04520 633 FunFam serine/threonine-protein kinase Nek6 isoform X2 96 284 - -
Vivi6g04520 633 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04520 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vivi6g04520 633 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04520 Vivi-Chr6 147007273 147012422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04520 9 271 MAP Kinase Kinase Kinase AT3G13530 32.830 1.81e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vivi6g04520 Pkinase 6.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04520 K08857 - gmx:100777214 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04520 6 147007273 147012422 Vivi6g04520 6 147007273 147012422 ECH