Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04519 ATGGCTGATAACCCTTACACCTCTAATCTTTTCTCATCTTCATCACCAAGTTTCTTCCAATTCAACCATATTTTCCCATCTTCAAACCCTTCTCCACACCACCACCATCACCCTTTTCTTCATCACCACCACAACAACCACACCTTTTTCCACTACCATCATATTTCATCTTCTTCTTCTCCACCTTCTCCTCCTCTCAGGGAAGAACTACCTCTTCTAAGCCTAATCCCAGCAAAGCAAGAAGAATATGAAGATCAACAAGAACATGATGAGGATATTCAAGACCTTCCTTGCACTGCCATGGATTTAGAGGAAAGAGAAGAAGACGGTAGTATTACTACTAGTAACACAGTTACTGTTGCACTTCACATAGGTTTGCCAAACCCTAGTGCTGCTGAAATGGCTTCTGTACTTTCTTCATCAAATAACTCCTCAGAGATCACTGTCACTGATAAAGAACAAGGTGATGATTCTTCTTCAGGGTTCATGATGCTTCATAATAACAGCCTTAACAAAGGACAGTATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCAACACAGTTTGCTTGCCCGGTTTGCTCCAAAACTTTCAATAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACCGAAAAGGTCCGGAATCTCTAAGAGGCACACAACCAACCGGAATGCTAAGGCTACCATGTTACTGCTGCGCACCAGGTTGCAGAAACAACATTGATCATCCTCGAGCAAAGCCATTGAAAGATTTCAGAACACTTCAAACACATTACAAGAGAAAACACGGAATTAAGCCATTCATGTGTCGAAAATGCAGCAAGGCTTTTGCTGTAAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTATGGTATTGTATCTGTGGTTCTGATTTCAAACATAAGAGGTCTCTTAAGGACCATATCAAAGCCTTTGGAAATGGACATGCTGCTTATGGATTTGATGGGTTTGAAGAAGAAGATGAACCAGCTTCTGAAGTTGAGCAAGATAATGATTAA 1047 0.4136 MADNPYTSNLFSSSSPSFFQFNHIFPSSNPSPHHHHHPFLHHHHNNHTFFHYHHISSSSSPPSPPLREELPLLSLIPAKQEEYEDQQEHDEDIQDLPCTAMDLEEREEDGSITTSNTVTVALHIGLPNPSAAEMASVLSSSNNSSEITVTDKEQGDDSSSGFMMLHNNSLNKGQYWIPTPSQILIGPTQFACPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGFDGFEEEDEPASEVEQDND 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04519 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Vivi6g04519 348 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Vivi6g04519 348 Gene3D Classic Zinc Finger 252 327 - -
Vivi6g04519 348 SUPERFAMILY beta-beta-alpha zinc fingers 256 294 IPR036236 -
Vivi6g04519 348 SMART c2h2final6 190 212 IPR013087 -
Vivi6g04519 348 SMART c2h2final6 274 294 IPR013087 -
Vivi6g04519 348 Gene3D Classic Zinc Finger 189 212 - -
Vivi6g04519 348 PANTHER ZINC FINGER PROTEIN WIP2 32 345 IPR043584 GO:0003700|GO:0010468
Vivi6g04519 348 FunFam zinc finger protein WIP2-like 189 212 - -
Vivi6g04519 348 FunFam Zinc finger protein WIP2 243 325 - -
Vivi6g04519 348 SUPERFAMILY beta-beta-alpha zinc fingers 186 212 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04519 Vivi-Chr6 146916123 146918563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04519 66 348 C2H2 Transcription Factor Family AT3G57670 68.910 6.55e-143 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g04519 zf-C2H2_6 0.00018 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04519 - - qsa:O6P43_010164 469.544