Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04518 ATGGCTCATCACTCTCATCGCTCTACGCATTTCTATTCATCATCATCTAATTTCTTCCAATTAAACCATATTTCTCCATCTTCAAACCATTCTCCACACCACCACCATCAACCTTTTCTTCATTACAACAACAGCAGCCACACCTTTTTTCAACACCATCATATTTCTTCTTCTTTACCACCTTTTCCTCCAGCTCTCAATGAAGAACTACCGCTTTTGAACCTAATCCCAGAAAAACAAGAAAAATATGAAGGTCAACAAGAACATGAGGAAGATATTCAAGACCTTCCTTGCACTGCCATGGATTTAGAAGAAAGGGAAGATGTTGGTAGTTCTACTTCTACTACCGTTACCGTTGCACTAGCACTTCAGATAGGTTTGCCAAACCCCAGTGCTGCTGAAATGGCTTCGGTACTTTCTTCAACTAATTACTCCTCAGAGATCACTGTCGCTGATAAAGAGCATGGCGATGATTCTTCTTCAGGTTTATTTATGCTTCATAATACTACCCTTAACAAAGGACAATATTGGATTCCTACTCCGTCTCAGATTTTCAATGGTCCAACTCAATTTTCTTGCACTGTTTGCTCCAAAACCTTCAACAGATATAACAATATGCAGATGCATATGTGGGGGCATGGATTACAATACAAAAAAGGTCTTGAATCTCTCAAAGGTACACAACCAACAGGAATGTTAAGGCTATCTTGTTACTGTTGTGTACCAGGGTGCATATACAACATCGATCATCCAAGAGCAAATCCATTGAAAGATTTTAGGACACTTCAAACACATTACAAGAGGAAACATGGAATTAAGCCTTTTATGTGCACAAAATGTAACAAATTTTTTGCTGTTAGAGGAGATTGGAGAACTCACGAAAAGAATTGTGGGAAGCTATGGTATTGCATTTGTGGTTCTCATTTCAAACATAAGAGGTCTCTTAAAGAACATGTGAATGCTTATGGAAATGGTCATGCAGCTAATGGATAA 993 0.3847 MAHHSHRSTHFYSSSSNFFQLNHISPSSNHSPHHHHQPFLHYNNSSHTFFQHHHISSSLPPFPPALNEELPLLNLIPEKQEKYEGQQEHEEDIQDLPCTAMDLEEREDVGSSTSTTVTVALALQIGLPNPSAAEMASVLSSTNYSSEITVADKEHGDDSSSGLFMLHNTTLNKGQYWIPTPSQIFNGPTQFSCTVCSKTFNRYNNMQMHMWGHGLQYKKGLESLKGTQPTGMLRLSCYCCVPGCIYNIDHPRANPLKDFRTLQTHYKRKHGIKPFMCTKCNKFFAVRGDWRTHEKNCGKLWYCICGSHFKHKRSLKEHVNAYGNGHAANG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04518 330 SMART c2h2final6 275 295 IPR013087 -
Vivi6g04518 330 SMART c2h2final6 191 213 IPR013087 -
Vivi6g04518 330 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Vivi6g04518 330 SUPERFAMILY beta-beta-alpha zinc fingers 259 295 IPR036236 -
Vivi6g04518 330 SUPERFAMILY beta-beta-alpha zinc fingers 184 213 IPR036236 -
Vivi6g04518 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 218 IPR013087 -
Vivi6g04518 330 PANTHER ZINC FINGER PROTEIN WIP2 33 328 IPR043584 GO:0003700|GO:0010468
Vivi6g04518 330 Gene3D Classic Zinc Finger 237 323 - -
Vivi6g04518 330 Gene3D Classic Zinc Finger 190 213 - -
Vivi6g04518 330 FunFam Zinc finger protein WIP2 244 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04518 Vivi-Chr6 146903517 146906108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04518 66 330 C2H2 Transcription Factor Family AT3G57670 58.562 2.65e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g04518 zf-C2H2_6 0.00026 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04518 - - vvo:131612664 457.603