Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04517 ATGGATGATCACCCTTACCGCTCTAATAATTTCTATTCATCATCACCAAGTTTCTTCCAATTCAACAATATTTCTCCATCTTCAAACCCTTCTCCATACAACCACCATCACCCTTTTCTTCATCACCGCAGCAACAACCAGTACCATCATATTTCTACTTCTTTACCACATGTTGCTCCGCTTCGGCAAGAGCTACCTCTTTTAAGCCTAATCCCAGAAAAACAAGAACATGAAGAAGATCTCCAATACCTTCCTTGTACTGCCATGGATTTAGAAGAAAGGAATGAAGATGGTAGTACAACTCCTACTACCGTTGCACTTCACATGGGTTTGCCAAACCCCAGTCCTGCTGAAATGGCTTTTCTACTTTCTTCATCAAATAATTCCTCAGAAATCACTGTCACTGATAAAGAACAAGGTGATGATTCTTCCTCAGGGTTCATGATGCTTCATAATAACAGCCTTAACAAAGGACAGTATTGGATCCCTACTCCATCTCAGATTCTCAATGGTCCAACACAGTTTTCTTGCCCGGTTTGCTCCAAAACTTTCAACAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAAAAAAGGTCTTGAATCTCTAAAAGGTACACAACCAACAGGAATGTTAAGGCTACCTTGTTACTGTTGTGTACTAGGGTGCATAAACAACATCGATCATCCAAGAGCAAATCCATTGAAAGATTTTCGAACACTTCAAACACATTACAAGAGAAAACATGGAATAAAGCCTTTTATGTGCACAAAATGTAGCAAATCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTATGGTGTTGTGTTTGTGGTTCAAATTTCAAACATAAGAGGTCTCTTAAAGATCATATCAATGCTTATGGAAATGGTCATGCTATTTATGGATAA 945 0.3884 MDDHPYRSNNFYSSSPSFFQFNNISPSSNPSPYNHHHPFLHHRSNNQYHHISTSLPHVAPLRQELPLLSLIPEKQEHEEDLQYLPCTAMDLEERNEDGSTTPTTVALHMGLPNPSPAEMAFLLSSSNNSSEITVTDKEQGDDSSSGFMMLHNNSLNKGQYWIPTPSQILNGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYKKGLESLKGTQPTGMLRLPCYCCVLGCINNIDHPRANPLKDFRTLQTHYKRKHGIKPFMCTKCSKSFAVRGDWRTHEKNCGKLWCCVCGSNFKHKRSLKDHINAYGNGHAIYG 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04517 314 FunFam zinc finger protein WIP2-like 174 197 - -
Vivi6g04517 314 FunFam Zinc finger protein WIP2 228 310 - -
Vivi6g04517 314 SUPERFAMILY beta-beta-alpha zinc fingers 171 197 IPR036236 -
Vivi6g04517 314 SUPERFAMILY beta-beta-alpha zinc fingers 244 279 IPR036236 -
Vivi6g04517 314 PANTHER ZINC FINGER PROTEIN WIP2 31 312 IPR043584 GO:0003700|GO:0010468
Vivi6g04517 314 Pfam C2H2-type zinc finger 175 194 - -
Vivi6g04517 314 SMART c2h2final6 284 310 IPR013087 -
Vivi6g04517 314 SMART c2h2final6 175 197 IPR013087 -
Vivi6g04517 314 SMART c2h2final6 259 279 IPR013087 -
Vivi6g04517 314 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Vivi6g04517 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
Vivi6g04517 314 Gene3D Classic Zinc Finger 174 197 - -
Vivi6g04517 314 Gene3D Classic Zinc Finger 240 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04517 Vivi-Chr6 146863569 146868351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04517 61 314 C2H2 Transcription Factor Family AT3G57670 60.825 1.18e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g04517 zf-C2H2_6 0.00031 CL0361